| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A1858 |
|---|
| Symbol | trpB |
|---|
| ID | 6518472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | + |
|---|
| Start bp | 1800458 |
|---|
| End bp | 1801651 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642746954 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_002114757 |
|---|
| Protein GI | 194736647 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0133] Tryptophan synthase beta chain |
|---|
| TIGRFAM ID | [TIGR00263] tryptophan synthase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.389614 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAC TTCTCAACCC CTACTTTGGT GAATTCGGCG GCATGTATGT GCCGCAGATC
CTGATGCCTG CGCTGAACCA GCTTGAAGAG GCCTTCGTCA GCGCGCAAAA AGATCCTGAA
TTTCAGGCGC AATTCGCCGA TCTGCTAAAA AACTACGCGG GACGCCCCAC TGCGCTGACG
AAATGCCAGA ACATTACCGC CGGTACGCGT ACCACGTTGT ATTTAAAGCG CGAAGATTTA
CTGCACGGCG GCGCGCACAA AACCAATCAG GTACTGGGTC AGGCGCTGCT GGCCAAACGG
ATGGGGAAAA GCGAGATTAT CGCTGAAACC GGCGCCGGTC AGCACGGCGT CGCCTCTGCG
CTCGCCAGCG CCCTGCTGGG TCTGAAATGC CGTATCTATA TGGGCGCCAA AGACGTTGAG
CGCCAGTCGC CGAACGTCTT CCGTATGCGT CTGATGGGCG CTGAGGTCAT CCCGGTTCAT
AGCGGCTCCG CTACGCTAAA AGATGCCTGT AACGAGGCGC TGCGCGACTG GTCCGGTAGT
TACGAAACCG CGCACTATAT GCTCGGCACG GCGGCAGGAC CGCATCCCTA TCCCACCATC
GTTCGCGAGT TCCAACGCAT GATTGGCGAA GAGACGAAAG CGCAAATCCT CGACAAAGAG
GGCCGTCTGC CAGATGCCGT TATCGCTTGC GTCGGTGGCG GCTCAAACGC TATCGGGATG
TTTGCGGATT TTATTAATGA TACCAGCGTC GGGCTAATAG GCGTTGAACC TGGCGGTCAC
GGTATTGAAA CCGGCGAGCA TGGCGCGCCG CTTAAACATG GTCGCGTTGG CATCTATTTC
GGGATGAAAG CGCCGATGAT GCAAACAGCG GACGGGCAAA TTGAAGAGTC CTATTCCATT
TCCGCCGGGC TCGATTTCCC ATCCGTTGGG CCGCAACATG CGTACCTGAA CAGCATCGGA
CGCGCGGATT ATGTCTCCAT TACCGATGAT GAGGCGCTGG AAGCCTTCAA AACGTTGTGC
CGCCATGAGG GAATTATCCC GGCGCTGGAA TCCTCCCACG CGTTGGCGCA CGCTCTGAAA
ATGATGCGCG AGCAGCCGGA AAAAGAGCAA CTGCTGGTGG TTAATCTCTC TGGCCGCGGA
GATAAAGACA TCTTTACCGT ACACGATATC CTGAAAGCGC GAGGGGAAAT CTGA
|
|---|
| Protein sequence | MTTLLNPYFG EFGGMYVPQI LMPALNQLEE AFVSAQKDPE FQAQFADLLK NYAGRPTALT
KCQNITAGTR TTLYLKREDL LHGGAHKTNQ VLGQALLAKR MGKSEIIAET GAGQHGVASA
LASALLGLKC RIYMGAKDVE RQSPNVFRMR LMGAEVIPVH SGSATLKDAC NEALRDWSGS
YETAHYMLGT AAGPHPYPTI VREFQRMIGE ETKAQILDKE GRLPDAVIAC VGGGSNAIGM
FADFINDTSV GLIGVEPGGH GIETGEHGAP LKHGRVGIYF GMKAPMMQTA DGQIEESYSI
SAGLDFPSVG PQHAYLNSIG RADYVSITDD EALEAFKTLC RHEGIIPALE SSHALAHALK
MMREQPEKEQ LLVVNLSGRG DKDIFTVHDI LKARGEI
|
|---|
| |