Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A1836 |
Symbol | pyrF |
ID | 6517974 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | - |
Start bp | 1777973 |
End bp | 1778770 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642746933 |
Product | orotidine 5'-phosphate decarboxylase |
Protein accession | YP_002114736 |
Protein GI | 194735972 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
TIGRFAM ID | [TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000112011 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.000315071 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCACGCCG TTTATCCAAT TTGCGCCACT TCCGGTGCCC ATCATCAAGA AGGTCTGGTC ATGACGTTTA CTGCTTCATC TTCTTCCTGC GCTATTACTG AATCGCCTGT CGTTGTGGCG TTGGATTACC ATGAACGCGA TAAAGCCCTG GCGTTTGTCG ATAAAATCGA TCCTCGCGAT TGTCGCTTAA AAGTGGGCAA AGAGATGTTC ACGTTATTTG GCCCACAGCT CGTCCGGGAT CTCCAGCAAC GTGGGTTTGA TGTCTTTCTT GATCTAAAAT TTCATGATAT TCCCAACACC ACGGCCCGGG CAGTCGCCGC AGCGGCAGAC CTGGGCGTCT GGATGGTAAA CGTTCACGCG TCTGGCGGGG CGAGAATGAT GGCCGCAGCG CGCGACGCGC TGGCGCCATT CGGTAAAGAT GCGCCGTTGC TCATTGCCGT GACCGTGTTG ACCAGTATGG AAACCAGCGA TCTGCGCGAT CTGGGCGTGA TGTTGTCACC GGCGGAACAT GCGGAGCGGC TGGCGCGCCT GACGCAGCAA TGCGGGCTGG ATGGCGTGGT CTGTTCCGCT CAGGAAGCGG TCAGATTTAA ACAGGTCTTT GGCGCTGCAT TTAAGCTGGT GACGCCGGGC ATTCGGCCCG CAGGCAGCGA GGCAGGCGAT CAGCGACGCA TTATGACGCC CGAACAGGCA TTATCCGCCG GCGTCGACTA TATGGTGATT GGCCGCCCGG TTACGCAATC GGTAGATCCG GCGCAAACGC TGAAGGATAT TAACGCGTCA CTGAAACGGG AGGCATAA
|
Protein sequence | MHAVYPICAT SGAHHQEGLV MTFTASSSSC AITESPVVVA LDYHERDKAL AFVDKIDPRD CRLKVGKEMF TLFGPQLVRD LQQRGFDVFL DLKFHDIPNT TARAVAAAAD LGVWMVNVHA SGGARMMAAA RDALAPFGKD APLLIAVTVL TSMETSDLRD LGVMLSPAEH AERLARLTQQ CGLDGVVCSA QEAVRFKQVF GAAFKLVTPG IRPAGSEAGD QRRIMTPEQA LSAGVDYMVI GRPVTQSVDP AQTLKDINAS LKREA
|
| |