Gene SeSA_A1588 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A1588 
Symbol 
ID6518952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand- 
Start bp1530163 
End bp1531416 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content55% 
IMG OID642746699 
Productinner membrane transport protein YnfM 
Protein accessionYP_002114502 
Protein GI194738069 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.185202 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTCGTA CAACTATTCT CGATGACGCC ACGGCGAGCG ATATCGATGA ACAATGCCAT 
TCTCAGCCGG TTCAATTTAT AAAACGCGGT ACAGCGCCTT TCATGCGCGT CACGCTGGCC 
CTTTTTTCCG CGGGCCTGGC GACTTTCGCG CTCCTTTATT GCGTTCAGCC TATACTACCG 
GTACTTTCCC AGGAGTTTGG CGTCTCCCCC GCCAGCAGCA GCGTTTCACT TTCTATTTCT 
ACCGCCATGC TGGCTATCGG CTTACTTTTT ACTGGCCCGC TTTCTGATGC GATAGGCCGT 
AAACCGGTGA TGGTCACCGC CTTGTTATTA GCCTCCTGCT GCACATTGTT ATCAACCATG 
ATGACCAGCT GGCATGGTAT TCTGATTATG CGTGCGCTGA TCGGTCTATC GTTAAGCGGC 
GTCGCCGCGG TGGGAATGAC CTACCTGAGC GAAGAAATCC ATCCCAGCTT TGTCGCTTTC 
TCCATGGGGC TCTATATTAG CGGTAATTCC ATCGGCGGGA TGAGCGGGCG TTTATTAAGC 
GGCGTCATGA CCGACTTTTT TAACTGGCGC ATCGCGCTGG CGGCCATCGG ATGCTTTGCG 
CTGGCGTCCG CGCTGATGTT CTGGAAGATT TTACCCGCCT CACAACATTT CCGTCCCACG 
TCGCTACGGC CTAAAACGCT ATTTATTAAT TTCCGTCTCC ACTGGCGCGA TCGGGGGTTA 
CCTCTGCTGT TTGCGGAAGG CTTTTTACTG ATGGGCGCAT TCGTCACCCT GTTTAACTAC 
ATTGGCTATC GCCTGATGCT CTCCCCCTGG GAATTAAGCC AGGCCGTGGT CGGACTGTTA 
TCCGTAGCCT ATCTCACCGG CACATGGAGC TCGCCGAAAG CTGGCGCAAT GACCTCACGC 
TATGGCCGGG GGCCGGTGAT GCTGTTCTCT ATCGCAGTAA TGCTGGGCGG GCTTTTACTG 
ACACTTTTTA CCTCGCTTTG GCTGATTTTT GCCGGAATGC TGCTTTTTTC CGCCGGCTTT 
TTCGCCGCGC ACTCCGTGGC CAGTAGTTGG ATTGGCCCGC GTGCGCGCCG GGCGAAGGGA 
CAGGCCTCGT CACTTTATCT TTTCAGCTAT TATCTGGGGT CCAGTATCGC CGGGACGCTA 
GGCGGCGTAT TCTGGCATAG TTACGGCTGG AACGGCGTAG GCGGTTTTAT CGCGCTAATG 
CTGGTGCTGG CCATCCTGGT CGGGACGCGG TTACATCATC GTCTTCACGC CTGA
 
Protein sequence
MSRTTILDDA TASDIDEQCH SQPVQFIKRG TAPFMRVTLA LFSAGLATFA LLYCVQPILP 
VLSQEFGVSP ASSSVSLSIS TAMLAIGLLF TGPLSDAIGR KPVMVTALLL ASCCTLLSTM 
MTSWHGILIM RALIGLSLSG VAAVGMTYLS EEIHPSFVAF SMGLYISGNS IGGMSGRLLS 
GVMTDFFNWR IALAAIGCFA LASALMFWKI LPASQHFRPT SLRPKTLFIN FRLHWRDRGL 
PLLFAEGFLL MGAFVTLFNY IGYRLMLSPW ELSQAVVGLL SVAYLTGTWS SPKAGAMTSR 
YGRGPVMLFS IAVMLGGLLL TLFTSLWLIF AGMLLFSAGF FAAHSVASSW IGPRARRAKG 
QASSLYLFSY YLGSSIAGTL GGVFWHSYGW NGVGGFIALM LVLAILVGTR LHHRLHA