| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A1510 |
|---|
| Symbol | |
|---|
| ID | 6515969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | + |
|---|
| Start bp | 1457560 |
|---|
| End bp | 1459605 |
|---|
| Gene Length | 2046 bp |
|---|
| Protein Length | 681 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642746622 |
|---|
| Product | secretion system apparatus protein SsaV |
|---|
| Protein accession | YP_002114427 |
|---|
| Protein GI | 194734119 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4789] Type III secretory pathway, component EscV |
|---|
| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.113276 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.87404 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTCAT GGTTAGGTGA GGGAATCAGG GCGCAACAGT GGCTCAGTGT ATGCGCGGGT
CGGCAGGATA TGGTTCTGGC GACGGTGTTA TTAATCGCTA TTGTGATGAT GCTGTTACCT
TTACCGACCT GGATGGTTGA TATCCTGATT ACTATCAACC TTATGTTTTC AGTGATCCTG
CTCTTAATTG CTATTTATCT TAGTGACCCT CTCGATTTAT CGGTATTTCC GTCTTTATTA
CTTATTACTA CATTATATCG TTTGTCACTC ACAATCAGCA CATCACGGCT GGTACTGTTA
CAACATAATG CCGGTAATAT TGTGGATGCT TTCGGTAAGT TTGTCGTAGG AGGAAATCTC
ACCGTTGGGT TGGTCGTATT TACCATCATT ACTATCGTGC AGTTTATTGT CATTACAAAA
GGTATCGAGA GGGTGGCGGA AGTTAGCGCA CGTTTCTCGC TTGATGGGAT GCCAGGCAAA
CAAATGAGTA TCGATGGCGA TTTGCGTGCC GGAGTTATCG ATGCAGACCA TGCCCGTACA
TTAAGACAGC ACGTCCAGCA GGAAAGCCGC TTTCTCGGTG CGATGGACGG TGCGATGAAA
TTTGTTAAAG GCGATACGAT TGCCGGTATT ATTGTTGTTC TGGTGAACAT TATCGGCGGT
ATTATTATCG CTATCGTACA ATATGATATG TCGATGAGTG AGGCTGTTCA CACTTATAGC
GTACTGTCAA TCGGAGATGG TTTATGTGGG CAAATTCCAT CGCTGCTGAT TTCCCTTAGC
GCGGGAATTA TTGTCACCCG TGTTCCGGGT GAGAAACGCC AGAACCTGGC GACAGAGTTG
AGTTCTCAAA TTGCCAGACA ACCTCAGTCG CTAATATTAA CCGCTGTGGT TTTAATGCTC
CTCGCCTTAA TTCCCGGCTT TCCTTTTATC ACTCTCGCTT TCTTTTCAGC GTTGTTAGCA
TTGCCAATTA TCCTCATTCG TCGCAAAAAG TCTGTGGTTT CCGCAAATGG CGTCGAAGCG
CCGGAAAAAG ATAGTATGGT TCCCGGCGCA TGTCCCCTAA TCTTACGTCT TACCCCGACG
TTACATTCTG CCGACCTGAT TCGTGATATT GACGCCATGA GATGGTTTTT ATTTGAGGAT
ACCGGCGTTC CTCTCCCTGA GGTGAATATT GAGGTTTTGC CTGAACCCAC CGAAAAATTG
ACGGTACTGC TATATCAGGA ACCCGTATTT AGTTTATCTA TTCCCGCCCA GGCGGATTAT
TTATTGATAG GCGCGGACGC CAGTGTGGTG GGTGATAGCC AGACGTTACC GAACGGGATG
GGGCAGATCT GTTGGCTTAC AAAAGACATG GCCCATAAGG CGCAAGGTTT TGGACTGGAC
GTTTTCGCGG GCAGCCAACG TATCTCTGCC TTATTAAAAT GTGTCCTGCT TCGGCATATG
GGAGAGTTTA TTGGTGTTCA GGAAACGCGT TATCTAATGA ATGCGATGGA AAAAAACTAC
TCTGAGCTGG TGAAAGAACT TCAGCGCCAG TTACCCATTA ATAAAATCGC TGAAACTTTG
CAGCGGCTTG TATCAGAGCG GGTTTCTATT AGAGATTTAC GTCTTATTTT CGGCACCTTA
ATTGACTGGG CACCACGTGA AAAAGATGTC CTGATGTTGA CAGAATATGT CCGTATCGCG
CTTCGCCGTC ATATTCTGCG TCGTCTTAAT CCGGAAGGAA AACCGCTGCC GATTTTGCGG
ATCGGCGAAG GTATTGAGAA CCTCGTGCGT GAATCCATTC GCCAGACGGC AATGGGGACC
TATACTGCGC TGTCGTCTCG TCATAAGACG CAGATCCTGC AACTTATCGA GCAGGCGCTG
AAGCAGTCAG CCAAATTATT CATTGTCACT TCTGTCGACA CCCGACGTTT CTTGCGAAAA
ATTACAGAAG CCACCTTGTT CGACGTACCG ATTTTGTCAT GGCAGGAATT AGGAGAGGAG
AGCCTTATAC AAGTGGTAGA AAGTATTGAC CTTAGCGAAG AGGAGTTGGC GGACAATGAA
GAATGA
|
|---|
| Protein sequence | MRSWLGEGIR AQQWLSVCAG RQDMVLATVL LIAIVMMLLP LPTWMVDILI TINLMFSVIL
LLIAIYLSDP LDLSVFPSLL LITTLYRLSL TISTSRLVLL QHNAGNIVDA FGKFVVGGNL
TVGLVVFTII TIVQFIVITK GIERVAEVSA RFSLDGMPGK QMSIDGDLRA GVIDADHART
LRQHVQQESR FLGAMDGAMK FVKGDTIAGI IVVLVNIIGG IIIAIVQYDM SMSEAVHTYS
VLSIGDGLCG QIPSLLISLS AGIIVTRVPG EKRQNLATEL SSQIARQPQS LILTAVVLML
LALIPGFPFI TLAFFSALLA LPIILIRRKK SVVSANGVEA PEKDSMVPGA CPLILRLTPT
LHSADLIRDI DAMRWFLFED TGVPLPEVNI EVLPEPTEKL TVLLYQEPVF SLSIPAQADY
LLIGADASVV GDSQTLPNGM GQICWLTKDM AHKAQGFGLD VFAGSQRISA LLKCVLLRHM
GEFIGVQETR YLMNAMEKNY SELVKELQRQ LPINKIAETL QRLVSERVSI RDLRLIFGTL
IDWAPREKDV LMLTEYVRIA LRRHILRRLN PEGKPLPILR IGEGIENLVR ESIRQTAMGT
YTALSSRHKT QILQLIEQAL KQSAKLFIVT SVDTRRFLRK ITEATLFDVP ILSWQELGEE
SLIQVVESID LSEEELADNE E
|
|---|
| |