Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A1491 |
Symbol | |
ID | 6519736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | + |
Start bp | 1444369 |
End bp | 1445862 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 642746603 |
Product | type III secretion outer membrane pore, YscC/HrcC family |
Protein accession | YP_002114408 |
Protein GI | 194734057 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.558162 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTAGTAA ATAAACGTTT AATTTTAATT TTACTATTTA TACTCAATAC GGCAAAGAGT GATGAGTTAT CATGGAAAGG TAATGACTTC ACCCTTTATG CCAGACAAAT GCCATTAGCA GAGGTTTTAC ATCTGCTCTC AGAGAACTAT GATACGGCTA TTACTATTAG CCCGTTGATA ACAGCTACAT TTAGTGGAAA AATTCCGCCT GGACCACCGG TCGATATTTT GAATAACCTG GCAGCACAAT ATGATTTGCT TACCTGGTTT GATGGTAGCA TGTTATATGT ATATCCTGCA TCGTTATTAA AACATCAGGT TATCACTTTC AATATTTTAT CTACTGGGCG GTTCATTCAT TACTTACGCA GCCAGAATAT CCTTTCATCA CCGGGATGCG AGGTTAAAGA AATTACCGGT ACCAGAGCTG TGGAGGTGAG CGGTGTTCCC AGTTGCCTGA CCCGTATTAG TCAATTAGCT TCAGTGCTGG ATAATGCGTT AATCAAACGA AAAGACAGTG CGGTGAGTGT AAGTATATAT ACGCTTAAGT ATGCCACTGC GATGGATACC CAATACCAAT ATCGCGATCA GTCCGTCGTG GTTCCTGGGG TCGTGAGTGT ATTGCGTGAG ATGAGTAAAA CCAGCGTCCC GGCGTCATCG ACGAACAATG GTTCACCCGC TACACAGGCA TTGCCCATGT TTGCTGCCGA CCCACGCCAG AATGCAGTGA TCGTTCGTGA TTATGCGGCC AATATGGCCG GGTATCGGAA ACTCATCACA GAATTAGATC AACGCCAGCA GATGATAGAG ATTTCGGTGA AAATTATCGA TGTTAATGCT GGCGATATTA ACCAGTTAGG CATCGACTGG GGAACGGCAG TGTCGCTGGG TGGCAAGAAA ATTGCGTTCA ATACAGGTTT GAATGACGGT GGAGCTAGCG GTTTTTCAAC GGTAATCAGC GATACCTCAA ACTTTATGGT GCGTTTGAAT GCCCTGGAAA AAAGCTCTCA GGCTTATGTA CTTTCCCAGC CATCTGTGGT GACTTTAAAT AATATCCAGG CTGTGCTGGA TAAGAATATT ACTTTCTATA CCAAACTGCA GGGAGAAAAA GTGGCTAAAC TTGAATCCAT CACTACGGGT TCTTTGTTGC GCGTTACACC TCGCTTGTTA AATGACAATG GCACGCAAAA AATAATGCTT AATCTTAATA TTCAGGATGG ACAACAAAGT GATACGCAAA GCGAAACAGA CCCGCTGCCC GAAGTGCAAA ATTCTGAAAT TGCTTCGCAG GCCACATTAT TGGCCGGACA AAGTCTATTG CTGGGAGGAT TTAAACAAGG TAAACAAATC CACTCGCAAA ACAAAATTCC TTTATTGGGC GATATTCCTG TCGTAGGTCA TTTGTTTCGC AATGATACGA CTCAAGTACA TAGTGTAATC AGGCTTTTTT TGATTAAAGC CTCAGTAGTA AATAATGGCA TATCTCATGG TTAA
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Protein sequence | MVVNKRLILI LLFILNTAKS DELSWKGNDF TLYARQMPLA EVLHLLSENY DTAITISPLI TATFSGKIPP GPPVDILNNL AAQYDLLTWF DGSMLYVYPA SLLKHQVITF NILSTGRFIH YLRSQNILSS PGCEVKEITG TRAVEVSGVP SCLTRISQLA SVLDNALIKR KDSAVSVSIY TLKYATAMDT QYQYRDQSVV VPGVVSVLRE MSKTSVPASS TNNGSPATQA LPMFAADPRQ NAVIVRDYAA NMAGYRKLIT ELDQRQQMIE ISVKIIDVNA GDINQLGIDW GTAVSLGGKK IAFNTGLNDG GASGFSTVIS DTSNFMVRLN ALEKSSQAYV LSQPSVVTLN NIQAVLDKNI TFYTKLQGEK VAKLESITTG SLLRVTPRLL NDNGTQKIML NLNIQDGQQS DTQSETDPLP EVQNSEIASQ ATLLAGQSLL LGGFKQGKQI HSQNKIPLLG DIPVVGHLFR NDTTQVHSVI RLFLIKASVV NNGISHG
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