Gene SeSA_A1375 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A1375 
Symbol 
ID6516986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand- 
Start bp1324955 
End bp1326448 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content45% 
IMG OID642746493 
Productggdef domain protein 
Protein accessionYP_002114298 
Protein GI194736073 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.789677 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.584294 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTTGC ATCATAAAGC GCTCAGGCAC TTTATCTCGG CAAGCGTCAT CGTTTTGACA 
TCGTCCTTCC TGATTTACGA ACTTATTGCC AGCGACAGGG CAATGAATGC CTATATGCGT 
TATATCATGG AGAGAGCCGA TTCGTCGTTT TTGTACGATA AGTACCAGAA TCAAAGCATC 
GCCGCACATT TGATGCGAAC TTTTGAAGCG CCGGGAGACC CCGTCACCGC AGAAAAACGC 
CGCGCGTTTT GCGACGCCTT TGAGGCTATT AACGGTACGC ACGGCGTCAA CCTGACCCGG 
CATAATTATC CGGCGCTACA TGGCACTCTG CAAACCGCCG CTACACAGTG TACCGATAAT 
CTTGATGACG CCCTTTTACT GCCTGCGTTT GATCAGGCGG TAAGCATCAA CCGTTCGCAG 
GACGACCACA GTCACGGGCT GGGCACACTG GAGCTTAAAT TCCGTTATTA CGTTGATTTA 
AATAAACATT ATGTCTATTT CTATGATTTA ATCAACTCAC GGCGCTTCGC CATGCATCGT 
TGGACTTTTT TACAAAAAGG CACAATGGGT ATTAACAGAA AAGATATAGA TAAACTTTTT 
ACCGGCCGTA CGGTTATTTC AAGTATTTAC ATGGATGATA TTACCCAGGA AAACGTCATG 
AGCTTTTTAA CGCCAGTCTA TCTGGCGGGA ACGTTAAAAG GTATCGTGAT GGTGGATGTT 
AACCAGGATA ATTTAAAAAA TATTTTTTAT ACCCAGGACC GTCCGCTGGT TTGGCGTTAT 
CTTAACGTAA CACTAAAGGA TATGGACTCC GGAAAAGAAA TTATTATTAA TCAAAGCAAA 
AATAATCTGT TTCAATATGT GAATTATAGC CATGATATCC CTGGTGGGCT GCGCGTTTCG 
TTGTCCCTTG ATTTTACCTA TTTCCTTGTC TCGTCCTGGA AGGCGCTGGC CTTTTACTTA 
CTGGCAACGG CGCTCCTGCT TAATATGGTA CGGATGCACT TTCGGCTTTA TCGCAACGTC 
ACACGCGAAA ATATTAGCGA TGCCATGACC GGGCTTTACA ACCGTAAAAT ATTAACACCG 
GAGCTGGAAC AGCGACTGCA ACGCCTGGTC AATGCCGGGA CGCCGGTGAC ATTTGTCGCT 
ATTGATTGCG ATAGGTTAAA ACTGATCAAC GATACCCAGG GGCACCAGGA AGGCGACCGA 
ATTATTACCC TGTTGGCGAA AGCGATTAAA ACATCGATTC GTAAAAGCGA TTACGCCATT 
CGCCTCGGCG GCGATGAGTT CTGTATTATT CTTGTTGATT ACGCGGCGGA TTTGGCTATC 
CATCTGCCGG AGCGTATTAT TCGTAACCTG CAAATTATCG CACCGGATAA GACAGTGCAT 
TTTTCTGCCG GGATTTATAA TATGCAGCCC AATGATACGA TTAATGATGC CTACCAGGCT 
TCCGATGCGC AGCTCTATCT GAACAAACAA CAAAAACAAC ATCGTTCATC ATAG
 
Protein sequence
MNLHHKALRH FISASVIVLT SSFLIYELIA SDRAMNAYMR YIMERADSSF LYDKYQNQSI 
AAHLMRTFEA PGDPVTAEKR RAFCDAFEAI NGTHGVNLTR HNYPALHGTL QTAATQCTDN 
LDDALLLPAF DQAVSINRSQ DDHSHGLGTL ELKFRYYVDL NKHYVYFYDL INSRRFAMHR 
WTFLQKGTMG INRKDIDKLF TGRTVISSIY MDDITQENVM SFLTPVYLAG TLKGIVMVDV 
NQDNLKNIFY TQDRPLVWRY LNVTLKDMDS GKEIIINQSK NNLFQYVNYS HDIPGGLRVS 
LSLDFTYFLV SSWKALAFYL LATALLLNMV RMHFRLYRNV TRENISDAMT GLYNRKILTP 
ELEQRLQRLV NAGTPVTFVA IDCDRLKLIN DTQGHQEGDR IITLLAKAIK TSIRKSDYAI 
RLGGDEFCII LVDYAADLAI HLPERIIRNL QIIAPDKTVH FSAGIYNMQP NDTINDAYQA 
SDAQLYLNKQ QKQHRSS