Gene SeSA_A1350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A1350 
Symbol 
ID6518002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand- 
Start bp1310655 
End bp1311788 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content48% 
IMG OID642746470 
ProductMscS Mechanosensitive ion channel 
Protein accessionYP_002114276 
Protein GI194735728 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0668] Small-conductance mechanosensitive channel 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.000205244 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.510591 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGTATT TAGCACGACT AAATATCGTT GCGATGCTGA TGTCAACGAC GTTCTGGATC 
AATCTGGCGG TCGTTTTTTT CGTCACCCTC ATTACTTACT GGCTCATCAA CTGGCTACTT 
AATGTGGTCT ATAAAGCGCT ACAACGCCCG GATAAAAAGG ATGATGCTCA TGGGCGGCTG 
CGGCCTATTG TTTTCGAGAT GCTGAAAAAG ACCAGTAAAA TGCTCATCTT TTTTGCCGCA 
TTTCTCTTTA GTCTGCGCTT TGTCGCCCTG CCCGACCGGT TATTCTCTAC CCTCTCTCAC 
GCCTGGTTTT TAGTGGTTGC GATTCAAATG GCGATTTGGC TTGATCAGGG CGTACAGTCA 
TGGATGCGTC ATTTACTGTA TGCCCCAGGC TCCAATAAAA ACCCGGTGAC GTTAGTCATT 
CTTGGTATGA TTTTGCGCGT GCTCGTCTGG TCTATGATGT TGCTCTCCAT CCTGGCGAAC 
GTCGGCGTGG ATATTACCGC ACTGGTAGCC AGCCTCGGCG TGGGCGGTAT TGCTATTGCC 
CTGGCGGTAC AAACCGTTCT GAGCGATGTC TTCGCTTCGC TGTCGATTGG TTTCGATAAG 
CCCTTCGAGA TCGGCGATTT CGTCGTCTTT AATGATGTAG CCGGTACGAT TGAACATATC 
GGTTTGAAAA CCACTCGCAT CCGTAGCCTC AGCGGCGAAC AGATTGTTTG TGCGAACGCG 
CAGTTGTTGC AGCAAACCAT ACACAACTAT AAGCGGATGC AAACGCGTCG TATCGTGTTT 
ACTTTTGGCG TCGCCACTGC GACACCGCCG GAAAAGTTAC GCTTCATCGG CGATATGGTG 
AAAAAGATTA TTACCGATGT CGGCGAAACA CAATTCGACC GCGCCCATCT ACTGGCCTTT 
GGTCAGGATC GGCTGACCTA TGAGGTAGTG CATATCGTCA ATACCGCGGA TTACAATAAA 
TACATGGATA TTCAGCAAGA GATAAATATC CGTATTATTG AAAAACTCAT TGAGAATGAT 
ATCGAACTGG CGCTGCCAAG TCTGGTCGTC AGAGCTCCTG TACAGGTTGA AGAGACCAGG 
GACTACAGTA ATACCGCTGA TGCAAAAAAC GCAGATAAAC GCGTCATGCA ATAA
 
Protein sequence
MEYLARLNIV AMLMSTTFWI NLAVVFFVTL ITYWLINWLL NVVYKALQRP DKKDDAHGRL 
RPIVFEMLKK TSKMLIFFAA FLFSLRFVAL PDRLFSTLSH AWFLVVAIQM AIWLDQGVQS 
WMRHLLYAPG SNKNPVTLVI LGMILRVLVW SMMLLSILAN VGVDITALVA SLGVGGIAIA 
LAVQTVLSDV FASLSIGFDK PFEIGDFVVF NDVAGTIEHI GLKTTRIRSL SGEQIVCANA 
QLLQQTIHNY KRMQTRRIVF TFGVATATPP EKLRFIGDMV KKIITDVGET QFDRAHLLAF 
GQDRLTYEVV HIVNTADYNK YMDIQQEINI RIIEKLIEND IELALPSLVV RAPVQVEETR 
DYSNTADAKN ADKRVMQ