Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A1253 |
Symbol | rne |
ID | 6518204 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | - |
Start bp | 1226659 |
End bp | 1229862 |
Gene Length | 3204 bp |
Protein Length | 1067 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642746376 |
Product | ribonuclease E |
Protein accession | YP_002114184 |
Protein GI | 194737331 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.16743 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAGAA TGTTAATCAA CGCGACTCAG CAGGAAGAGT TGCGCGTCGC CCTTGTAGAT GGGCAGCGTC TGTACGATCT GGATATAGAA AGCCCCGGAC ACGAGCAGAA AAAAGCGAAC ATCTACAAAG GCAAAATTAC CCGTATTGAA CCGAGCCTGG AAGCGGCTTT TGTTGATTAC GGCGCAGAAC GCCACGGTTT CCTCCCGTTA AAAGAAATTG CCCGCGAATA TTTCCCCGCT AACTACAGCG CTCATGGTCG CCCGAACATT AAAGACGTGT TACGCGAAGG CCAGGAAGTC ATTGTTCAAA TCGATAAAGA AGAGCGCGGC AACAAAGGCG CGGCGTTAAC CACCTTTATC AGTCTGGCGG GCAGCTACCT GGTGCTGATG CCGAATAACC CGCGCGCGGG TGGTATTTCC CGTCGCATTG AAGGCGACGA TCGTACCGAG TTAAAAGAAG CGCTGGCCAG CCTGGAACTT CCTGAAGGAA TGGGGCTTAT CGTGCGTACC GCAGGCGTGG GTAAATCCGC CGAAGCGTTG CAGTGGGATT TAAGCTTCCG CCTGAAACAC TGGGAAGCCA TTCAGAAAGC CGCTGAAAGC CGTCCCGCGC CGTTCCTGAT CCATCAGGAA AGCAACGTCA TCGTACGCGC GTTTCGCGAC TATTTGCGTC AGGATATCGG TGAAATCCTG ATCGACAATC CCAAAGTGAT GGAAATGGCG CGTCAGCATA TCGCCGCGTT GGGCCGCCCG GATTTTAGCA GCAAAATTAA GCTGTACACC GGTGAAATCC CGTTGTTCAG CCATTACCAG ATCGAATCGC AGATCGAGTC AGCGTTCCAG CGTGAAGTGC GCCTGCCCTC CGGCGGCTCC ATCGTCATTG ACAGTACCGA AGCGTTAACC GCCATCGATA TCAACTCCGC CCGCGCGACT CGCGGCGGCG ATATCGAAGA AACGGCGTTT AATACCAACC TGGAAGCGGC CGATGAGATT GCCCGCCAGT TGCGTCTGCG CGACCTGGGC GGCCTGATCG TTATCGACTT TATCGATATG ACGCCGGTAC GTCACCAGCG CGCGGTAGAA AACCGTCTGC GTGAAGCGGT GCGTCAGGAC CGGGCGCGTA TTCAGATTAG CCATATTTCC CGCTTCGGCC TGCTCGAAAT GTCGCGTCAG CGCCTGAGCC CGTCGCTGGG CGAATCCAGT CATCACGTGT GTCCGCGCTG TAGCGGTACC GGCACCGTGC GCGATAACGA ATCTCTGTCG CTGTCCATTC TGCGCCTGAT TGAAGAAGAA GCGCTGAAAG AGAATACGCA GGAAGTCCAT GCCATTGTTC CGGTGCCGAT CGCCTCTTAT CTGCTTAACG AAAAACGGAC GGCAGTTAAC GCTATTGAGA CGCGTCAGGA TGGCGTCCGC TGTGTCATCG TCCCGAACGA TCAGATGGAA ACGCCGCACT ATTCCGTGCT GCGCGTACGC AAAGGGGAAG AAACGCCGAC CCTGAGCTAC ATGCTGCCGA AGCTGCACGA AGAAGCGATG GCGCTGCCTT CTGAAGAAGA GTACGCCGAG CGTAAACGCC CGGAACAGCC TGCGCTGGCG ACATTCGCTA TGCCAGATGT GCCTCCGGCG CCGACGCCTG TCGAACCGGC GGTTAGCGTC GCCACGGCGA AAAAGGATAA TGTTGCCGCC GCGCAGCCTG CCCAGCCAGG TCTGTTTAGC CGCTTCCTTA ACGCGCTGAA ACAACTGTTC AGCGGTGAAG AAACGAAAGC CGTCGAAACA GCCGCGCCGA AAGCGGAAGA AAAAGCGGAG CGTCAGCAGG ATCGTCGCAA GCCACGGCAG AACAACCGTC GCGATCGTAA CGAACGCCGC GACACCCGTG ATAACCGTGC CGGACGTGAC GGCGGCGAGA GCCGCGACGA TAATCGTCGT AACCGTCGCC AGGCGCAGCA GCAAAATGCG GAAGCGCGCG ATACCCGCCA GCAGGAAACG GCGGAAAAAG TGAAAACCGG CGATGAGCAG CAACAGACGC CGCGTCGCGA ACGCAGCCGC CGCCGCAATG ATGACAAACG CCAGGCGCAG CAGGAAGTAA AAGCGCTTAA CCGCGAAGAA CTGCCTGTCC AGGAGACCGA GCAGGAAGAA CGCGTTCAGC AGGTTCAGCC GCGCCGCAAG CAGCGTCAGC TTAATCAGAA AGTCCGCTTT ACCAACAGCG CAGTGGTTGA AACGGTTGAT ACGCCAGTCG TCGTCGACGA ACCACGCCCG GTTGAAAACG TTGAACAGCC CGTTCCAGCG CCGCGTACCG AATTGGCGAA AGTTGATTTA CCTGTCATTG CCGATATCGC GCCGGAGCAG GATGATAGCG TAGAACCTCG CGATAATACT GGTATGCCGC GTCGCTCCCG CCGTTCTCCG CGCCACCTGC GCGTTAGCGG TCAGCGTCGT CGTCGCTATC GTGACGAGCG CTACCCGACA CAATCGCCGA TGCCGTTAAC CGTCGCCTGC GCGTCGCCGG AAATGGCGTC CGGTAAAGTC TGGATCCGCT ACCCGATTGT CCGTCCTCAG GAAACGCAGG TTGTTGAAGA GCAGCGTGAA GCAGATCTGG CGCTGCCACA ACCGGTTGTC GCTGAACCGC AGGTTATCGC TGCGACCGTA GCGTTAGAAC CACAAGCGTC GGTACAGGCG GTAGAAAACG TTGCCGTTGA GCCGCAGACT GTCGCCGAAC CACAGGTGCC GGAAGTCGTC GAGGTCGAGA CAACGCATCC GGAAGTGATT GCCGCGCCGG TTGATGAACA GCCGCAACTG ATTGCCGAAA GCGATACGCC GGTGGCGCAA GAGGTTATTG CTGACGCCGA ACCGGTAGCA GAAACCGCCG ACGCGTCCAT TACGGTGGCT GAAAACGTAG CTGATGTTGT CGTTGTCGAG CCAGAAGAAG AGACAAAAGC GGAAGCGGCT GTTGTGGAGC ACACGGCAGA AGAAACCGTT ATCGCACCGG CCCAGGTGGT GGAAAAGCCG CAGGACGTTG TCTGTGTTGA CGATCACAAC CACGCCAGCG CGCCGATGAC GCGTGCGCCA GCGCCGGAAT ATGTGCCGGA AACCCCGCAC CATAGCGACT GGCAGCGTCC TTCCTTCCAC TTTGAAGGTA AAGGCGCAGC AGGCGGACAC AGCGCCACAC GTGTCGCCAG CGCCCCGGCG ACACGCCCAC AGCCGGTAGA ATGA
|
Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY GAERHGFLPL KEIAREYFPA NYSAHGRPNI KDVLREGQEV IVQIDKEERG NKGAALTTFI SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALASLEL PEGMGLIVRT AGVGKSAEAL QWDLSFRLKH WEAIQKAAES RPAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKVMEMA RQHIAALGRP DFSSKIKLYT GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQRAVE NRLREAVRQD RARIQISHIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS LSILRLIEEE ALKENTQEVH AIVPVPIASY LLNEKRTAVN AIETRQDGVR CVIVPNDQME TPHYSVLRVR KGEETPTLSY MLPKLHEEAM ALPSEEEYAE RKRPEQPALA TFAMPDVPPA PTPVEPAVSV ATAKKDNVAA AQPAQPGLFS RFLNALKQLF SGEETKAVET AAPKAEEKAE RQQDRRKPRQ NNRRDRNERR DTRDNRAGRD GGESRDDNRR NRRQAQQQNA EARDTRQQET AEKVKTGDEQ QQTPRRERSR RRNDDKRQAQ QEVKALNREE LPVQETEQEE RVQQVQPRRK QRQLNQKVRF TNSAVVETVD TPVVVDEPRP VENVEQPVPA PRTELAKVDL PVIADIAPEQ DDSVEPRDNT GMPRRSRRSP RHLRVSGQRR RRYRDERYPT QSPMPLTVAC ASPEMASGKV WIRYPIVRPQ ETQVVEEQRE ADLALPQPVV AEPQVIAATV ALEPQASVQA VENVAVEPQT VAEPQVPEVV EVETTHPEVI AAPVDEQPQL IAESDTPVAQ EVIADAEPVA ETADASITVA ENVADVVVVE PEEETKAEAA VVEHTAEETV IAPAQVVEKP QDVVCVDDHN HASAPMTRAP APEYVPETPH HSDWQRPSFH FEGKGAAGGH SATRVASAPA TRPQPVE
|
| |