Gene SeSA_A1186 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A1186 
Symbol 
ID6519588 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp1165182 
End bp1165820 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content55% 
IMG OID642746311 
ProductHTH-type transcriptional regulator RutR 
Protein accessionYP_002114120 
Protein GI194737095 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.151745 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCAAC GCACAGAGAA AAAAATCGGG AAACGCTCGC AGGCCACCGG TGCAAAACGG 
CAGCTTATCT TAACCGCCGC GCTTGCTGTT TTTTCCCAGT ATGGCATTCA TGGCGCGCGT 
CTTGAGCAGG TCGCCGAGCG GGCAGGCGTC TCCAAAACCA ATCTGCTTTA TTATTATCCC 
TCGAAAGAGG CGCTGTATGT CGCGGTAATG CGACAGATCC TGGATGTCTG GCTGGCGCCG 
CTCAAGGCGT TTCGCGCAGA ATTTTCCCCT CTGGAGGCCA TCAAAGAGTA TATCCGTCTC 
AAGCTGGAGG TTTCGCGTGA TTATCCGCAG GCGTCGCGGC TCTTCTGCAT GGAGATGCTG 
GCGGGCGCGC CGCTCTTAAT GGAGGAACTG ACCGGCGATC TAAAAGCGTT GATAGATGAA 
AAATCCGCGC TGATTGCCGG ATGGGTGCAC AGCGGGAAAC TGGCGCCTGT CTCCCCGCAC 
CATTTGATCT TCATGATTTG GGCCGCCACG CAACATTACG CCGATTTTGC CCCTCAGGTT 
GAGGCGGTAA CCGGCGCGAC GCTTCGCGAT GAAGCCTTTT TCAACCAAAC GGTCGAAAGC 
GTTCAGCGCA TTATTATTGA AGGGATTCGC GTGCGTTAA
 
Protein sequence
MSQRTEKKIG KRSQATGAKR QLILTAALAV FSQYGIHGAR LEQVAERAGV SKTNLLYYYP 
SKEALYVAVM RQILDVWLAP LKAFRAEFSP LEAIKEYIRL KLEVSRDYPQ ASRLFCMEML 
AGAPLLMEEL TGDLKALIDE KSALIAGWVH SGKLAPVSPH HLIFMIWAAT QHYADFAPQV 
EAVTGATLRD EAFFNQTVES VQRIIIEGIR VR