Gene SeSA_A1152 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A1152 
Symbol 
ID6516148 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand- 
Start bp1135122 
End bp1135997 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content39% 
IMG OID642746277 
Productsecreted effector protein 
Protein accessionYP_002114086 
Protein GI194737406 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.324884 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.527932 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAATAA CTAACGCGTC CCCAGAAAAT ATATTAAGAT ATTTGCATGC GGCCGGTACC 
GGTACGAAAG AAGCAATGAA AAGTGCAACT TCACCACGCG GTATACTGGA ATGGTTTGTC 
AATTTTTTTA CCTGTGGTGG AGTAAGAAGA AGCAATGAAA GATGCTTTCG GGAGGTAATT 
GGAAAACTGA CCACATCATT ATTATATGTA AATAAAGATG CTTTCTTCGA TGGTAATAAA 
ATATTTCTGG AGGATGTCAA CGGGTGTACT ATATGTCTGT CATGTGGAGC AGCATCCGAA 
AATACGGATC CCATGGTCAT TATTGAAGTG AACAAAAATG GAAAAACTGT AACGGATAAC 
GTTGATAGTG AGAGATTTTG GAATGTATGT CGAATGTTAA AGCTGATGAG TAAACATAAT 
ATACAACAGC CTGATTCACT TATAACCGAG GATGGTTTTC TGAACCTGCG CGGAGTAAAC 
CTGGCTCATA AAGATTTCCA GGGGGAAGAT TTGTCAAAAA TAGATGCTTC TAATGCAGAT 
TTCCGTGAAA CAACTCTTTC TAATGTAAAT TTAGTCGGTG CAAATTTGTG TTGTGCAAAT 
CTACACGCTG TAAATCTAAT GGGTTCAAAC ATGACTAAAG CAAACCTGAC TCACGCAGAC 
CTGACTTGCG CTAACATGTC CGGTGTAAAC TTAACCGCTG CAATTCTATT CGGCTCAGAC 
TTAACTGACA CCAAACTAAA TGGTGCAAAA TTAGATAAGA TAGCTCTAAC TTTAGCGAAA 
GCATTAACAG GAGCCGATCT GACAGGTAGT CAACATACCC CTACTCCACT CCCGGATTAC 
AATGATAAAA CGCTTTTCCC CCATCCAATA TTTTAG
 
Protein sequence
MPITNASPEN ILRYLHAAGT GTKEAMKSAT SPRGILEWFV NFFTCGGVRR SNERCFREVI 
GKLTTSLLYV NKDAFFDGNK IFLEDVNGCT ICLSCGAASE NTDPMVIIEV NKNGKTVTDN 
VDSERFWNVC RMLKLMSKHN IQQPDSLITE DGFLNLRGVN LAHKDFQGED LSKIDASNAD 
FRETTLSNVN LVGANLCCAN LHAVNLMGSN MTKANLTHAD LTCANMSGVN LTAAILFGSD 
LTDTKLNGAK LDKIALTLAK ALTGADLTGS QHTPTPLPDY NDKTLFPHPI F