| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A1098 |
|---|
| Symbol | msbA |
|---|
| ID | 6516442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | + |
|---|
| Start bp | 1078942 |
|---|
| End bp | 1080690 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642746226 |
|---|
| Product | lipid transporter ATP-binding/permease protein |
|---|
| Protein accession | YP_002114036 |
|---|
| Protein GI | 194734585 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.687379 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATAACG ATAAAGATCT CTCTACGTGG CAGACCTTCC GCCGACTGTG GCCAACCATA
GCGCCTTTTA AAGCAGGTCT GATCGTGGCG GGCATAGCGT TAATTCTCAA CGCAGCCAGC
GATACCTTCA TGCTATCGCT CCTCAAGCCA TTACTGGATG ATGGTTTCGG TAAAACGGAT
CGCTCAGTGT TGCTGTGGAT GCCGCTGGTG GTTATTGGGC TGATGATATT ACGAGGCATC
ACTAGCTATA TCTCCAGCTA CTGTATTTCA TGGGTGTCAG GCAAGGTGGT AATGACCATG
CGCCGTCGCC TGTTTGGCCA TATGATGGGA ATGCCCGTCG CCTTCTTTGA TAAACAGTCT
ACCGGTACGC TGCTGTCGCG TATTACTTAC GATTCAGAAC AGGTTGCCTC TTCTTCATCT
GGCGCGCTGA TTACCGTGGT GCGTGAAGGG GCATCGATCA TCGGATTGTT TATCATGATG
TTCTATTACA GCTGGCAGTT GTCGATCATC CTGGTTGTTC TGGCACCGAT TGTGTCGATT
GCGATTCGCG TTGTCTCAAA GCGGTTCCGC AGCATCAGTA AAAATATGCA GAACACGATG
GGACAAGTGA CTACCAGCGC TGAACAAATG CTGAAAGGAC ACAAAGAGGT ACTGATTTTC
GGCGGTCAGG AAGTCGAAAC TAAACGCTTT GATAAAGTCA GCAATAAGAT GCGACTGCAA
GGCATGAAAA TGGTCTCTGC CTCGTCAATT TCCGATCCTA TCATTCAGCT CATTGCCTCG
CTGGCGCTGG CGTTTGTTCT CTATGCTGCG AGCTTCCCAA GTGTAATGGA TAGCCTGACG
GCTGGGACCA TCACCGTGGT GTTCTCCTCC ATGATCGCGC TGATGCGTCC ATTAAAATCG
CTGACAAACG TTAACGCGCA GTTCCAGCGT GGGATGGCGG CTTGTCAGAC GTTGTTTGCG
ATTCTGGACA GCGAACAGGA GAAAGATGAA GGTAAACGTG TCATTGACCG CGCGACCGGC
GATCTCGAAT TCCGCAATGT GACGTTTACT TACCCGGGCC GTGAAGTGCC GGCATTGCGT
AACATCAATT TGAAAATTCC TGCCGGGAAA ACCGTGGCGC TGGTGGGGCG TTCCGGATCG
GGTAAATCAA CTATCGCCAG TCTGATCACC CGTTTCTACG ATATTGATGA AGGACACATC
CTGATGGATG GTCACGATCT ACGCGAATAC ACTCTGGCCT CTCTACGTAA TCAGGTGGCG
CTGGTTTCGC AAAACGTGCA TCTGTTTAAC GACACGGTCG CTAATAACAT TGCTTATGCC
CGGACGGAAG AATACAGCCG CGAGCAGATT GAAGAGGCGG CGCGCATGGC CTATGCCATG
GACTTTATCA ACAAGATGGA TAATGGCCTG GATACCATTA TCGGCGAAAA CGGCGTACTG
CTTTCTGGCG GTCAACGCCA GCGTATCGCG ATTGCCCGCG CCTTACTGCG CGACAGCCCG
ATTCTGATCC TTGATGAAGC TACGTCCGCG CTGGATACCG AATCTGAACG TGCGATTCAG
GCAGCGTTGG ATGAGCTGCA GAAAAACCGT ACCTCTCTGG TGATTGCGCA TCGTCTCTCC
ACCATCGAAC AGGCGGATGA GATCGTTGTG GTCGAAGACG GCATTATCGT TGAGCGCGGC
ACTCATAGCG AGTTGCTGGC ACAACACGGC GTTTACGCCC AGCTACATAA GATGCAATTT
GGCCAATGA
|
|---|
| Protein sequence | MHNDKDLSTW QTFRRLWPTI APFKAGLIVA GIALILNAAS DTFMLSLLKP LLDDGFGKTD
RSVLLWMPLV VIGLMILRGI TSYISSYCIS WVSGKVVMTM RRRLFGHMMG MPVAFFDKQS
TGTLLSRITY DSEQVASSSS GALITVVREG ASIIGLFIMM FYYSWQLSII LVVLAPIVSI
AIRVVSKRFR SISKNMQNTM GQVTTSAEQM LKGHKEVLIF GGQEVETKRF DKVSNKMRLQ
GMKMVSASSI SDPIIQLIAS LALAFVLYAA SFPSVMDSLT AGTITVVFSS MIALMRPLKS
LTNVNAQFQR GMAACQTLFA ILDSEQEKDE GKRVIDRATG DLEFRNVTFT YPGREVPALR
NINLKIPAGK TVALVGRSGS GKSTIASLIT RFYDIDEGHI LMDGHDLREY TLASLRNQVA
LVSQNVHLFN DTVANNIAYA RTEEYSREQI EEAARMAYAM DFINKMDNGL DTIIGENGVL
LSGGQRQRIA IARALLRDSP ILILDEATSA LDTESERAIQ AALDELQKNR TSLVIAHRLS
TIEQADEIVV VEDGIIVERG THSELLAQHG VYAQLHKMQF GQ
|
|---|
| |