Gene SeSA_A1020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A1020 
Symbol 
ID6516002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand- 
Start bp993723 
End bp994934 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content58% 
IMG OID642746150 
Productinner membrane protein YbjJ 
Protein accessionYP_002113961 
Protein GI194734975 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0738] Fucose permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.241467 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGTCC TCTCCTCACG TAACGCCTTA AAACGCCGTA CCTGGGCGCT GTTTATGTTC 
TTCTTTTTAC CCGGACTGCT GATGGCCTCC TGGGCAACCC GAACGCCTGC TATTCGGGAT 
ATTCTTTCCG TCTCTACCGC GGAAATGGGG GCGGTCTTAT TCGGGCTTTC TATCGGTTCA 
ATGAGCGGTA TTCTTTGTTC CGCCTGGCTG GTGAAACGAT TTGGCACCCG AAAGGTTATT 
CGCACGACGA TGACCTGCGC AGTAACCGGG ATGGTTATTC TTAGCGTCGC GCTGTGGTGC 
GCCTCGCCGC TGATTTTTGC CCTTGGATTA GCCGTTTTCG GCGCCAGTTT TGGCGCCGCC 
GAAGTGGCGA TTAATGTCGA AGGCGCGGCG GTCGAACGCG AGCTGAATAA AACCGTTCTG 
CCGATGATGC ATGGTTTCTA CAGTTTCGGC ACGCTGGCGG GCGCTGGTGT CGGCATGGCG 
TTAACCGCAT TAAGCGTCCC GGCTAACATC CATATCATCC TCGCGGCTGC CGTGGCGATC 
GCGCCCATTT TTATCGCCAT TCGGGCGATC CCTGACGGTA CGGGTAAAAA CGCATCGGAA 
GATGCTCACC TTCAGGAAAA AGGATTACCT TTTTATCGGG ACATCCAGCT TTTGCTTATT 
GGCGTGGTGG TGCTGGCAAT GGCATTCGCC GAAGGCTCTG CGAATGACTG GCTGCCGCTA 
CTGATGGTAG ACGGACACGG TTTTAACCCA ACCTCCGGCT CTCTGATCTA CGCCGGTTTC 
ACGCTAGGTA TGACCGTTGG CCGCTTTACC GGCGGCTGGT TTATTGACCG CTATAGCCGG 
GTGACGGTTG TTCGCGCCAG CGCGTTGATG GGAGCGCTGG GCATTGGTCT GATTATTTTT 
GTCGATAGCG ACTGGGTTGC CGGCGTCTCG GTCATTCTTT GGGGCTTAGG CGCTTCGCTC 
GGCTTCCCGC TGACCATTTC CGCCGCCAGC GATACCGGTC CCGACGCGCC GACGCGCGTG 
AGCGTTGTCG CCACGACCGG CTATCTGGCG TTTTTGGTCG GGCCGCCGCT GTTGGGCTAT 
CTGGGAGAGC ACTATGGATT ACGCAGCGCC ATGATGGTTG TGCTGGCGCT GGTTATTCTG 
GCGGCGCTGG TGGCGAAGGC CGTCGCCAAA CCTGTATCGA CTCCGCAACC GGTGATGGAG 
CATAACGCAT GA
 
Protein sequence
MTVLSSRNAL KRRTWALFMF FFLPGLLMAS WATRTPAIRD ILSVSTAEMG AVLFGLSIGS 
MSGILCSAWL VKRFGTRKVI RTTMTCAVTG MVILSVALWC ASPLIFALGL AVFGASFGAA 
EVAINVEGAA VERELNKTVL PMMHGFYSFG TLAGAGVGMA LTALSVPANI HIILAAAVAI 
APIFIAIRAI PDGTGKNASE DAHLQEKGLP FYRDIQLLLI GVVVLAMAFA EGSANDWLPL 
LMVDGHGFNP TSGSLIYAGF TLGMTVGRFT GGWFIDRYSR VTVVRASALM GALGIGLIIF 
VDSDWVAGVS VILWGLGASL GFPLTISAAS DTGPDAPTRV SVVATTGYLA FLVGPPLLGY 
LGEHYGLRSA MMVVLALVIL AALVAKAVAK PVSTPQPVME HNA