Gene SeSA_A0949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A0949 
Symbol 
ID6517307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand
Start bp923074 
End bp925341 
Gene Length2268 bp 
Protein Length755 aa 
Translation table11 
GC content47% 
IMG OID642746081 
Productleucine-rich repeat protein 
Protein accessionYP_002113892 
Protein GI194735238 
COG category[S] Function unknown 
COG ID[COG4886] Leucine-rich repeat (LRR) protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.697592 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTAATA TTACTAATAT ACAATCTACG GCAAGGCATC AAAGTATTAG CAATGAGGCA 
TCAACAGAGG TGCCTTTAAA AGAAGAGATA TGGAATAAAA TAAGTGCCTT TTTCTCTTCA
GAACATCAGG TTGAAGCACA AAGCTGCATC GCTTATCTTT GTCATCCACC TGAAACCGCC
TCGCCAGAAG AGATCAAAAG CAAGTTTGAA TGTTTGAGGG AGTTAGCCTT CCCGGCGTAT
GCGGATAATA TTCAGAGTAA TAGAGGGGGG ACAGACCAAT ACTGTATTTT GAATGAAAAT
AGTCAGGAAA TTCTGTCTAT AATTTTTAAT ACAGAGGGCT ATACCGTTGA GGGAGGGGGA
AAGTCAGTCA CCTATACCCG TGTAACAGAA AGCGAGCAGG CGAGTAGCGC TTCCGGCTCC
AAAGTTGCTG TGAATTATGA GTTAATCTGG TCTGAGTGGG TAAAAGAGGC ACCAGCGGAA
GAGGCAGCAA ATCGTGAAGA AGCCGTACAA CGGATGCGTG ACTGCCTGAA AAATAATAAG
ACGGAACTCC GTCTGAAAAT ATTAGGACTT ACCACTATAC CCGCCTGTAT TCCTGAGCAG
ATAACTACTC TGACACTCGA TAACAATGAA CTGAAAAGTT TGCCGGAAAA TTTACAGGGA
AATATAAAGA CCCTGTATGC CAGCAGTAAT CGGCTAACCA GTATCCCTGC CACGTTACCG
GATACCATAC AGAAAATGGA GCTGAGCATT AACCGTATTA CTGAATTACC GGAACGTTTG
CCTTCAGCGC TTCAATCGCT GGATCTTTTC CATAATAAAA TTAGTTCTTT ACCTGAAAAT
CTACCTGAGG AACTTCGGTA CCTGAGCGTT TATGATAACC GCATAAGGAC ACTGCCAGAA
CATCTTCCGT CAGGGATTAC CCATTTGAAT GTGCAGAGTA ATTCGTTAAC CGCTCTGCCT
GAAACATTGC CGCCGGGCCT GAAGAATCTG GAGGCCGGCG AAAATGCCTT AACCAGTCTG
CCCGCATCGT TACCACCAGA ATTACAGTTC CTGGATGTAA GTAAAAATCA GATTACTGTT
CTGCCTGAAA CACTACCTCC CACGATAACA ACGCTGGACG TTTCCCGTAA CGCATTGAGT
AATCTACCGG AAAACCTCCC GGCGGCATTA CAAATAATGC AGGCCTCTCG CAATCGCCTG
GTCCGTCTCC CGGAGTCGTT ACCCCATTTT CGTGGTGAAG GACCTCAACC TACAAGAATA
ATCGTAGAAC GTAATCCTTT TTCAGAACGA ACAATACAGA ATATGCAGCG GCTAATGTCC
TCTGCGGGTT ATCAGGGACC CCGGGTATTG TTTGCCATGG GCGACTTTTC AACTGTTCGG
GTAACTCGAC CACTGCATCA AGCTGTCCGG GGGTGGCTAA CCAATCTCGA GGAGGAAGAC
GTCAACCAAT GGCGGGCGTT TGAGACGGAA GTAAACGCGG CAGCCTTCAG CATGTTTCTG
GATCGTCTTG GCGATACGCA GAACACCCGA CATTCGGATT TTAAGGAGCA AGTCTCCGCC
TGGCTAATGC GCCTGGCTGA TGATAGCACA CTAAGAGAAA CCGCATTTAT TATAGCGATG
GATGCAACGA TAAGCTGTGA AGATCGGGTC ACACTGGCAT ACCACCAAAT GCAGGAAGCG
ACGTTGGTTC ATGATGCTGA AAGAGGCGTC TTTGATAGCC ACTTAGCGGA ACTGATTATG
GCGGGGCGTG AAATCTTTCG GCTGGAGCAA ATAGAATCGC TCGCGAGAGA AAAGGTAAAA
CGGCTGTTTT TTATTGACGA AATCGAAGTA TTTCTGGGTT TTCAGAATCA GTTACGAGAG
TCGCTGTCGC TGACAACAAT GACCCAGGAT ATGCGATTTT ATAACGTTTC GGGTATCACT
GAGTCTGACC TTGACGAGGC GGAATTAAGG ATAAAAATTG CTGAAAATAG GGATTTTCAC
AAATGGTTTG CGCTGTGGGG GCCGTGGCAT AAAGTGCTGG AGCGTATAGC GCCAGAAGAG
TGGCGTGAAA TGATGGCTAA AAGGGCTGAG TATATTGAAA CGGATGAGTA TCAGAGCCGG
GTCAATGCTG AACTGGAAGC GTTAGGAATA GCGGGTGATC CTGACGCAGA GCGCATGGCT
GGGATGCGGA TAATGGAAGA GATCAATCAG ACCCACTTTA CTGGGATCAT GGAGAATATA
TTGCTGAAAA AAGAGGTGAG CTCGCTCATG AGCGCCTACT GGCGATAG
 
Protein sequence
MFNITNIQST ARHQSISNEA STEVPLKEEI WNKISAFFSS EHQVEAQSCI AYLCHPPETA 
SPEEIKSKFE CLRELAFPAY ADNIQSNRGG TDQYCILNEN SQEILSIIFN TEGYTVEGGG
KSVTYTRVTE SEQASSASGS KVAVNYELIW SEWVKEAPAE EAANREEAVQ RMRDCLKNNK
TELRLKILGL TTIPACIPEQ ITTLTLDNNE LKSLPENLQG NIKTLYASSN RLTSIPATLP
DTIQKMELSI NRITELPERL PSALQSLDLF HNKISSLPEN LPEELRYLSV YDNRIRTLPE
HLPSGITHLN VQSNSLTALP ETLPPGLKNL EAGENALTSL PASLPPELQF LDVSKNQITV
LPETLPPTIT TLDVSRNALS NLPENLPAAL QIMQASRNRL VRLPESLPHF RGEGPQPTRI
IVERNPFSER TIQNMQRLMS SAGYQGPRVL FAMGDFSTVR VTRPLHQAVR GWLTNLEEED
VNQWRAFETE VNAAAFSMFL DRLGDTQNTR HSDFKEQVSA WLMRLADDST LRETAFIIAM
DATISCEDRV TLAYHQMQEA TLVHDAERGV FDSHLAELIM AGREIFRLEQ IESLAREKVK
RLFFIDEIEV FLGFQNQLRE SLSLTTMTQD MRFYNVSGIT ESDLDEAELR IKIAENRDFH
KWFALWGPWH KVLERIAPEE WREMMAKRAE YIETDEYQSR VNAELEALGI AGDPDAERMA
GMRIMEEINQ THFTGIMENI LLKKEVSSLM SAYWR