| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A0812 |
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| Symbol | |
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| ID | 6517376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011094 |
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| Strand | + |
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| Start bp | 787858 |
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| End bp | 789786 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642745947 |
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| Product | putative sigma-54 dependent transcriptional regulator |
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| Protein accession | YP_002113770 |
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| Protein GI | 194736230 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAGA CGAAAGATAT AGCCGCATCT CCTCTCTGTT TTGTCTCTCC TTACCCTCAA
CTGGCAAAGG CTGCCGAGGC GCTGGTCGCG CAGTTGGATT ACGCCGTCAC TATTCATCAA
ACGACGCTTA ATCGTATCCT GGATGAGCTA CCTTTATTAG AGTCCCGTGG GCACCAGGTA
CTGATTAGTC GTGGCGGCTG TGCGGAAATA TTAAAAAAGC ACAGTAAATT ACCGGTAGTC
GAAATTAAAA TGTCCGGCTA CGACATTCTT GATGCGCTTA TCCCTTTTAA AGGACAAAAA
GGCACTGTCG GTATTGTCGG CTTTTCCAGT GTGATCAAAG GATGCGCGCG CGTAGCGGAA
CAGTTAAATA TTAACTATAA AATTTTTACC TTACAGGGAA ATGATAAAGA AACGATTTCT
TGCCTGAAGC GGCAATTAGC GTCCACGCCA TTAGATTGCA TTGTTGGCGA TACCGTTTGT
CAGGATTATT TTTCACCGCT GGGCTCGCAA TTCCGTTTAC TTGATTCCAG CCCCGCCTCA
ATAACCGAAG CTCTGGAAGA AGCCCGCTCA TTATATCTGG CTTTTCGCAG CCAATTACTG
GAGCGCCATC ATCTGCAGCT GATTCTCGAT CAGTTTGATA AAGCTGTTAT CACGCTTGAT
GATACCGGCG CGTTACTGCA TTACAATAAA TATGCGAGCC AACTTTTTAA AGTTAACGCC
TCCGGTGAAA TTTATGACGC GTCTTTCCTG AAACAGGTAT TGCACCAGGA GCGGCATACA
TTACGCGAGG GAAAAACCGT CAGCGCGAAA GTCGTCGATA CGCCGCAAGG CGCGATGGTG
GTTAATCTGT ATCCGGTATT TGCGGCCAGA CAGTTAAGCC GGGTAGTGTT GACGATGCAA
ACCGTCTCCA GTTTACAGGG GGCGGAACAT CATGTTCGCC GCCAGGAACT GTCTCGCCGC
GGCTTGAGCG CCCGCTATCA TTTCGACGAT CTGCTTACCG AAAACCCGGA AATGCTGCGT
CGTCTGGCGA TCATTAAAAA TTATGCCGGT ACGGACGCGA CTATCTTAAT TAATGGCGAA
AGCGGGACGG GGAAAGAGGT GCTGGCGCAA AGTATTCATA ATGCCAGCCA ACGCGTTAAC
GGCCCGTTTG TCGCCATTAA CTGCGGCGCG ATGGCCCCTC AGATTCTGGA GAGCGAACTC
TTTGGCTATG TCGCCGGCGC ATTTACCGGC GCGTCGCCGA AAGGCAAAAT AGGCCTGTTT
GAATTAGCGC ACCACGGTAC CATTTTTTTG GATGAGATTA GCGAACTGGA TAAACCGCTA
CAGACGCGCT TATTACGGGT ATTGCAGGAG CGGCAGATTA TGCGGCTGGG CTCAGACCAG
ATGATACCTG TTGATATTCG CGTGATTGCA GCGACCAATC AGACATTAAC GAAGCTCATT
GCGGACGGGA CATTTCGCGA AGATCTTTAC TATCGGCTTA ACGTATTAAA AGTGACCACC
ATCCCGCTAC GCAAACGTCC GGAGGATATC AAAGCCATCG GCCTGTCGCT GCTTACCAGT
TTCAGCCAGC ATTATAAACG CCCGGCACTA ACGTTAACCC CGGCGCTGTG GCAAGAGCTT
CAGCGCTTCG CCTGGCCCGG AAACGTCAGG CAGTTAAGCA ATATTATCGA ACGGCTGGTG
CTCTCTATTG ATCACTCCCC GGCAACGCTG GATGAGGGCC GCCTCTTGCT GGACGATCTG
GAAGAGGGGA GCCGACGCGA GCCAAGTACC TGCCACGACT GCCAGATGCT GGCTGGCGAT
TATAAAACGA TTCGCCTGCG TATTTTGAGA AAATTATTAG AGGCGGAAAG GGATAATAAA
TCGTTAGTGG CGAAACGATT AAATGTCGAT CGTACCTCGC TGACGCGCTG GATACGTGAG
TCGGCCTGA
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| Protein sequence | MNKTKDIAAS PLCFVSPYPQ LAKAAEALVA QLDYAVTIHQ TTLNRILDEL PLLESRGHQV
LISRGGCAEI LKKHSKLPVV EIKMSGYDIL DALIPFKGQK GTVGIVGFSS VIKGCARVAE
QLNINYKIFT LQGNDKETIS CLKRQLASTP LDCIVGDTVC QDYFSPLGSQ FRLLDSSPAS
ITEALEEARS LYLAFRSQLL ERHHLQLILD QFDKAVITLD DTGALLHYNK YASQLFKVNA
SGEIYDASFL KQVLHQERHT LREGKTVSAK VVDTPQGAMV VNLYPVFAAR QLSRVVLTMQ
TVSSLQGAEH HVRRQELSRR GLSARYHFDD LLTENPEMLR RLAIIKNYAG TDATILINGE
SGTGKEVLAQ SIHNASQRVN GPFVAINCGA MAPQILESEL FGYVAGAFTG ASPKGKIGLF
ELAHHGTIFL DEISELDKPL QTRLLRVLQE RQIMRLGSDQ MIPVDIRVIA ATNQTLTKLI
ADGTFREDLY YRLNVLKVTT IPLRKRPEDI KAIGLSLLTS FSQHYKRPAL TLTPALWQEL
QRFAWPGNVR QLSNIIERLV LSIDHSPATL DEGRLLLDDL EEGSRREPST CHDCQMLAGD
YKTIRLRILR KLLEAERDNK SLVAKRLNVD RTSLTRWIRE SA
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