Gene SeSA_A0466 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A0466 
SymbolsecD 
ID6517912 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand
Start bp475177 
End bp477024 
Gene Length1848 bp 
Protein Length615 aa 
Translation table11 
GC content54% 
IMG OID642745616 
Productpreprotein translocase subunit SecD 
Protein accessionYP_002113440 
Protein GI194734472 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTAAACC GTTATCCTTT GTGGAAGTAC ATCATGCTGG TCGTCGTGAT TATCGTCGGC 
CTGCTTTACG CACTTCCCAA CCTGTATGGT GAGGATCCGG CTGTTCAAAT CACTGGCGTG
CGCGGCGTCG CCGCCAGTGA GCAAACGCTG ATCCAGGTCC AGAAAACGTT ACAAGAAGAA
AAAATTCCCG CTAAGTCTGT GGCACTGGAA GAGGGCGCTA TTCTTGCGCG CTTCGACACC
ACCGATACCC AGCTACGCGC CCGTGAAGCG CTGATGAGCG TGCTGGGGGA TAAATATGTC
GTGGCGCTTA ACCTTGCGCC GGCTACGCCG CGCTGGTTGG CGGCTATTCA CGCCGATCCG
ATGAAGCTCG GTCTTGATCT GCGCGGCGGC GTTCACTTCC TGATGGAAGT GGATATGGAT
ACCGCGTTAG GTAAACTCCA GGAACAAAAT ATCGATAGCC TGCGCAGCGA TCTGCGTGAA
AAAGGCATTC CTTATACCAC CGTTCGTAAA GAAAATAATT ATGGGCTGAG CATCACGTTC
CGTGACAGCA AAGCGCGTGA TGAGGCGATC GCCTATCTGA CGCCGCGTCA TCGTGACCTG
GTGATTTCCA GCCAGAGCGG CAATCAACTT CGCGCGGTAA TGACCGATGC GCGCCTGAGC
GAAGCGCGTG AATACGCCGT TCAGCAGAAC ATTAATATTC TGCGTAACCG TGTTAACCAA
CTGGGCGTCG CGGAGCCTGT CGTACAGCGT CAGGGCGCAG ACCGTATTGT GGTTGAGCTG
CCGGGTATCC AGGATACCGC TCGTGCGAAA GAAATTCTCG GCGCGACCGC GACGCTGGAA
TTCCGTCTGG TGAATACCAA CGTTGACCAG GCCGCTGCTG CTGCCGGGCG CGTACCGGGT
GATTCCGAAG TGAAACAGAC CCGCGAAGGT CAGCCGGTGG TATTGTACAA ACGCGTGATC
CTCACCGGCG ACCATATCAC CGACTCGACG TCCAGCCAGG ATGAATATAA CCAACCGCAG
GTTAACATCT CGCTGGATAG CGCAGGCGGC AATATCATGT CTAACTTCAC TAAGGACAAT
ATCGGCAAAC CGATGGCGAC CCTGTTTGTG GAGTATAAAG ACAGCGGTAA GAAAGACGCT
AACGGTCGCG CTGTACTGGT GAAACAGGAA GAGGTGATTA ACATTGCCAA CATCCAGTCT
CGGCTGGGTA ACAGCTTCCG TATTACCGGT ATCAGCAACC CGAACGAAGC GCGTCAGCTC
TCGTTGTTGC TGCGTGCGGG CGCCCTAATT GCGCCGATTC AGATCGTTGA AGAGCGCACC
ATTGGCCCGA CTTTGGGTAT GCAAAATATT AAGCAGGGCC TGGAAGCCTG TCTGGCCGGT
CTGGTGGTCT CCATCCTGTT CATGATCTTC TTCTATAAGA AGTTTGGTCT GATTGCGACC
AGCGCGTTAG TGGCTAACCT GGTGTTGATT GTCGGTATCA TGTCGCTGTT GCCGGGGGCA
ACGCTCAGTA TGCCGGGGAT TGCGGGTATT GTGTTAACCC TTGCGGTGGC GGTCGACGCC
AACGTTCTGA TTAACGAACG TATCAAAGAA GAGTTGAGTA ATGGCCGCAC GGTACAGCAG
GCGATAAACG AAGGCTATGC CGGCGCGTTC AGTTCCATCT TCGATGCGAA CATCACGACG
CTGATTAAAG TCATCATTCT GTATGCTGTC GGTACCGGGG CAATTAAAGG ATTCGCGATT
ACGACCGGTA TCGGTGTGGC GACGTCGATG TTTACCGCGA TTATCGGTAC GCGTGCTATC
GTAAACCTGC TATATGGCGG CAAGCGCGTC ACTAAGCTGT CAATCTGA
 
Protein sequence
MLNRYPLWKY IMLVVVIIVG LLYALPNLYG EDPAVQITGV RGVAASEQTL IQVQKTLQEE 
KIPAKSVALE EGAILARFDT TDTQLRAREA LMSVLGDKYV VALNLAPATP RWLAAIHADP
MKLGLDLRGG VHFLMEVDMD TALGKLQEQN IDSLRSDLRE KGIPYTTVRK ENNYGLSITF
RDSKARDEAI AYLTPRHRDL VISSQSGNQL RAVMTDARLS EAREYAVQQN INILRNRVNQ
LGVAEPVVQR QGADRIVVEL PGIQDTARAK EILGATATLE FRLVNTNVDQ AAAAAGRVPG
DSEVKQTREG QPVVLYKRVI LTGDHITDST SSQDEYNQPQ VNISLDSAGG NIMSNFTKDN
IGKPMATLFV EYKDSGKKDA NGRAVLVKQE EVINIANIQS RLGNSFRITG ISNPNEARQL
SLLLRAGALI APIQIVEERT IGPTLGMQNI KQGLEACLAG LVVSILFMIF FYKKFGLIAT
SALVANLVLI VGIMSLLPGA TLSMPGIAGI VLTLAVAVDA NVLINERIKE ELSNGRTVQQ
AINEGYAGAF SSIFDANITT LIKVIILYAV GTGAIKGFAI TTGIGVATSM FTAIIGTRAI
VNLLYGGKRV TKLSI