| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A0419 |
|---|
| Symbol | prpR |
|---|
| ID | 6516271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | - |
|---|
| Start bp | 428870 |
|---|
| End bp | 430495 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642745571 |
|---|
| Product | propionate catabolism operon regulatory protein PrpR |
|---|
| Protein accession | YP_002113395 |
|---|
| Protein GI | 194734203 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.530564 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0144123 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACTG CCCACAGCGC TCCGCGCGAT AATAGCGATA AACCGGTGAT CTGGACGGTC
TCCGTAACGC GTCTGTTCGA ACTGTTTCGG GATATCAGCC TGGAATTCGA TCATCTGGCG
ACCATCACGC CTATTCAACT CGGCTTTGAA AAGGCGGTGA CCTACATTCG CAAAAAACTG
GCGACCGAGC GCTGCGACGC GATTATCGCG GCGGGTTCGA ACGGGGCCTA TTTAAAAAGT
CGCCTGTCAA TACCGGTGAT CCTCATCAAG CCCAGCGGAT TCGATGTATT ACAGGCGCTG
GCGAAAGCAG GAAAGCTCAC CTCATCTATC GGTATCGTGA CCTATCAGGA GACCATTCCG
GCTTTACTTG CCTTTCAGAA AACGTTTCAC CTCCGTCTTG AACAGCGAAG CTATGTCACC
GAAGAGGACG CGCGCGGGCA AATTAACGAA CTTAAGGCCA ACGGTATTGA GGCCGTCGTC
GGCGCGGGAT TGATTACCGA TCTGGCGGAA GAAGCGGGAA TGACTGCCAT CTTTATTTAT
TCCGCGGCGA CCGTTCGTCA GGCTTTCCAT GATGCGCTGG ATATGACCCG TCTGACACGG
CGCCAGCGCG TGGATTACCC ATCCGGCAAG GGATTACAAA CCCGGTATGA ACTGGGCGAT
ATACGCGGCC AGTCGCCGCA AATGGAGCAG CTCCGCCAGA CGATTACGCT CTATGCCCGC
TCCCGTGCGG CAGTGCTGAT TCAGGGGGAA ACAGGGACCG GAAAAGAGCT GGCGGCGCAG
GCGATTCACC AGACGTTTTT TCACCGCCAG CCTCACCGTC AGAATAAGCC ATCCCCTCCC
TTTGTCGCCG TTAATTGCGG CGCGATTACC GAGTCGTTGC TGGAAGCGGA ACTGTTTGGT
TATGAAGAGG GCGCGTTTAC CGGTTCACGA CGAGGAGGCC GGGCGGGGCT GTTTGAAATC
GCACACGGCG GCACGCTGTT TCTGGATGAA ATCGGCGAAA TGCCCTTGCC GTTGCAAACC
CGACTCTTGC GCGTACTGGA GGAAAAAGCC GTCACTCGCG TCGGCGGACA CCAGCCGGTC
CCGGTGGATG TCCGGGTGAT CAGCGCTACG CATTGCGATC TGGATCGGGA GATAATGCAA
GGACGTTTTC GCCCCGATCT CTTTTACCGC CTGAGTATTC TGCGCCTGAC GCTTCCTCCT
TTGCGCGAGC GGCAGGCTGA TATTTTGCCG CTGGCGGAAA GCTTTTTAAA ACAGTCGCTG
GCGGCGATGG AAATTCCGTT TACCGAATCG ATACGTCATG GATTGACACA GTGTCAGCCG
CTTTTGCTGG CCTGGCGCTG GCCCGGTAAT ATTCGCGAAC TGCGTAATAT GATGGAGCGC
CTGGCACTTT TTTTAAGCGT CGATCCCGCG CCAACGCTGG ACAGGCAATT TATGCGGCAG
TTATTACCTG AGCTTATGGT GAACACAGCA GAGCTGACGC CTTCAACCGT GGATGCGCAC
ACGTTACAGG ATGTACTGGC GCGCTTTAAG GGCGATAAGA GCGCGGCGGC GCGTTATCTG
GGGATTAGCC GCACCACTCT GTGGCGTCGT TTAAAAGCTG GTGCCAAAGA CCAGTCGGAT
AATTAA
|
|---|
| Protein sequence | MTTAHSAPRD NSDKPVIWTV SVTRLFELFR DISLEFDHLA TITPIQLGFE KAVTYIRKKL
ATERCDAIIA AGSNGAYLKS RLSIPVILIK PSGFDVLQAL AKAGKLTSSI GIVTYQETIP
ALLAFQKTFH LRLEQRSYVT EEDARGQINE LKANGIEAVV GAGLITDLAE EAGMTAIFIY
SAATVRQAFH DALDMTRLTR RQRVDYPSGK GLQTRYELGD IRGQSPQMEQ LRQTITLYAR
SRAAVLIQGE TGTGKELAAQ AIHQTFFHRQ PHRQNKPSPP FVAVNCGAIT ESLLEAELFG
YEEGAFTGSR RGGRAGLFEI AHGGTLFLDE IGEMPLPLQT RLLRVLEEKA VTRVGGHQPV
PVDVRVISAT HCDLDREIMQ GRFRPDLFYR LSILRLTLPP LRERQADILP LAESFLKQSL
AAMEIPFTES IRHGLTQCQP LLLAWRWPGN IRELRNMMER LALFLSVDPA PTLDRQFMRQ
LLPELMVNTA ELTPSTVDAH TLQDVLARFK GDKSAAARYL GISRTTLWRR LKAGAKDQSD
N
|
|---|
| |