Gene SeSA_A0397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A0397 
Symbol 
ID6518296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp401567 
End bp402310 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content41% 
IMG OID642745549 
Productputative response regulator 
Protein accessionYP_002113373 
Protein GI194735095 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.00385918 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones5 
Fosmid unclonability p-value0.0000663843 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTCAGA ACAATTATCT GATTGACAAA AGAGTTATTC TTGATTGTGA ACGAATGACG 
CTTTCCTGCG CCGGAGAGTC GATAACGATA TCTGAATCGG AACGCAGTTT GCTTATCGCT 
TTTCATGAAG GCCTTTTTAA AAAAGATGAT TTAATTAACT ATGTCTGGGG GCGCAAAGGT 
GTCGTGGTCT CTGATGCCAG TTATTATAAA CTGATTAACC AGCTACGAGG ATCATTTGAT 
AAAATAGGCC TTAAGGGGGC GTCTGTTGTG ACTCGCCCTC GCGTGGGTGT TTTACTCTCA 
GTTTCCATTG AACCGTTGAG TGATGAGGCG CAAAATACGC CGTTGCCTGC TGTTGCTGAA 
ACAGAATTAT CGACGGTTGA AGTGCGACAC GATGACACTA TTATTACCCC AATACCGGGC 
GCTGTGAATA AAAAAGATTG GCTCTACTTT TGCCTGGCCG CGCTTCTGAT GTTTTTTATG 
ATGTATAAAG TTAAGGGTGA AAATATTGAT TACTTTACCC TCCAGGGTTC GTATGATGGA 
TACACTTTTT ATAGTGTCGG GCATGATAAA ACCCATCTGA CGGATATCGT TGAAGCGTAC 
TCCGAGATGA GCAATGAAAT ACATAAACAA AACGGAAAAA TCATTTATTA CATTCGCGTT 
CCTAATACAA ATATTTTTGT CCAGTGTCTT AACCAACTTG ATATAGCGGA GCCGAAATGC 
ATTTCCATAA AAGAACGTTA TTAA
 
Protein sequence
MSQNNYLIDK RVILDCERMT LSCAGESITI SESERSLLIA FHEGLFKKDD LINYVWGRKG 
VVVSDASYYK LINQLRGSFD KIGLKGASVV TRPRVGVLLS VSIEPLSDEA QNTPLPAVAE 
TELSTVEVRH DDTIITPIPG AVNKKDWLYF CLAALLMFFM MYKVKGENID YFTLQGSYDG 
YTFYSVGHDK THLTDIVEAY SEMSNEIHKQ NGKIIYYIRV PNTNIFVQCL NQLDIAEPKC 
ISIKERY