Gene SeSA_A0340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A0340 
Symbol 
ID6517438 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp347917 
End bp348738 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content52% 
IMG OID642745494 
Productpolysaccharide deacetylase family protein 
Protein accessionYP_002113319 
Protein GI194737619 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.568999 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.212352 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTATG CACGACATTT ACTGGTATTA ATGTATCACC ATGTCAGTGA TAAACCCGGA 
CAGATAACCT TATCTCCCCG TACGTTCCGG GCGCAGATGA AATGGCTGGC TGAATCTGGC 
TGGAAAACCG TTACCGCAGC AGAGGTGGAA GCTTTTTATC ATGGTGCAAG ATTGCCTCGT 
AAAAGCGTCA TGCTGACCTT TGATGGCGGC TGGCTGGATA ACTGGTTGCA GGTTTTTCCG 
GTGCTGCAGG AGTTTAATCT GCATGCGCAT CTCTTTCTTG TGACCAGTTT GATCAGTGAC 
GGACCGGTCC GTATTCCTGC AGGCGAACCG GTGTACTCTC ATGATGAGTG TCAGATGCTG 
GTTAAACAAG GCCGGGCTGA TGAGGTCATG CTGCGCTGGT CAGAGGTCCG GGAGATGCAC 
CTCAGTGGCC TTGTTGAGTT TCACTCGCAC ACGCACACCC ACCGACGCTG GGACCAGAAA 
CCTGTGTCCC GTAATCCGTC GGATTTGCTT CGTGTCGATA TTCTTCTTAG TCGTAAGCGG 
ATGAGGGAGA TGCTGGGTTA CTGCAGTCAG CATCTGTGCT GGCCTGAGGG CTGGTATTGT 
TCTGACTATA TTCATGTGGC TGAAGAGCTG GGGTTCACAT ACCTGTATAC CACAGAAAGG 
CGTATGAACA ATCCAGTCAT CGGTTCACAG CGTATTGGTC GTATCAACAC AAAGGAGCGA 
AAGAATGTGG GCTGGCTGAA ACGTCGTCTG TTTTATCACA CCACGCCCGG ATTTTCTTCG 
CTGCTGGCCC GGCATAAGGG GGCACGTCGG ATAGCTGACT GA
 
Protein sequence
MSYARHLLVL MYHHVSDKPG QITLSPRTFR AQMKWLAESG WKTVTAAEVE AFYHGARLPR 
KSVMLTFDGG WLDNWLQVFP VLQEFNLHAH LFLVTSLISD GPVRIPAGEP VYSHDECQML 
VKQGRADEVM LRWSEVREMH LSGLVEFHSH THTHRRWDQK PVSRNPSDLL RVDILLSRKR 
MREMLGYCSQ HLCWPEGWYC SDYIHVAEEL GFTYLYTTER RMNNPVIGSQ RIGRINTKER 
KNVGWLKRRL FYHTTPGFSS LLARHKGARR IAD