Gene SeSA_A0199 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A0199 
Symbol 
ID6518142 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp208696 
End bp209925 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content50% 
IMG OID642745367 
Productpolysaccharide deacetylase domain protein 
Protein accessionYP_002113199 
Protein GI194734707 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.37766 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.364365 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTATGC GCGTTGTTCT TATCTTGCTG TTCTTTTTCT CCGGTAATGT GTTGGCTGCC 
TTGCCCGCTC GTTATATGCA AACGACGAAA GACGCCGCCA TCTGGTCGCA GATTGGCGAT 
AAAATGGTGA CCGTAGGGAA TATCCGCGCC GGACAAATTC TTTCCGTAAC GCCTGTTGCG 
GCTGATTATT ATGCCTTTAA ATTCGGCTTC GGCGAGGGGT TTATCGATAA AGACCATCTG 
GAACCTGTGC AGGGAAAACA AAAAGTGGAA GATGGCCTGG GCGATCTTAA CAAGCCGCTC 
AGCAATCAGA ATCTGGTGAC CTGGAAGGAC ACGCCGGTGT ATAACGCGCC GGACATCAGT 
AGCGCCCCGT TTGGCGTATT GGTGGACAAC TTGCGTTACC CCATTATTAG TAAGCTGAAA 
GGCAGGCTAC ATCAAACCTG GTATCAGATC CGTATTGGCG ACAGGCTGGC TTATGTCAGC 
GCCATGGATG CGCAGGAAGA CAACGGCATT CCGATTTTGA CCTATCATCA CATCTTACGT 
GATGAAGAGA ATACCCGTTT TCGCCATACG TCCACCACGA CTTCGGTTCG GGCATTCAGC 
AACCAAATGA CCTGGCTTCG CGATCGCGGC TATGCCACGT TGACGATGTA CCAACTGGAG 
GATTACATCC ATAACCGCGC GAATTTCCCG GCGCGCGCGG TGGCTATCAC CTTTGATGAT 
GGCCTTAAAT CAGTGAGTCG CTATGCGTAT CCGGTATTAA AGCAGTACGA TATGAAAGCG 
ACGGCATTTA TTATTTCATC GCGTATTAAG CGCCATCCGC AAAAATGGAA TCCCAGGTCG 
CTGCAATTTA TGAGCGTGTC CGAATTGCGC AAGATAAGCG ATGTTTTTGA TTTTCAGTCG 
CATACTCACT TTTTACATCG GGTAGATGGG CATCGTCGTC CGATTTTATA TAGCCGCAGC 
TACCATAATA TTCTGTTTGA TTTTGAACGT TCGCGGCGGG CGCTCGCACA GTTTACTCCG 
CACGTATTTT ATCTTTCTTA TCCCTTTGGC GGCTATAACG CGACCGCGAT CAAAGCAGCA 
AAAGACGCCG GTTTCCATCT GGCGGTCACC ACGGTGAGAG GGAAGGTGAA GCCGGGAGAT 
AATCCGATGC TGCTCAAAAG GCTGTATATT TTACGCACGG ATTCGCTGGA AACCATGTCG 
CGGCTGATCA GCAACCAGCC GCAGGGGTAA
 
Protein sequence
MVMRVVLILL FFFSGNVLAA LPARYMQTTK DAAIWSQIGD KMVTVGNIRA GQILSVTPVA 
ADYYAFKFGF GEGFIDKDHL EPVQGKQKVE DGLGDLNKPL SNQNLVTWKD TPVYNAPDIS 
SAPFGVLVDN LRYPIISKLK GRLHQTWYQI RIGDRLAYVS AMDAQEDNGI PILTYHHILR 
DEENTRFRHT STTTSVRAFS NQMTWLRDRG YATLTMYQLE DYIHNRANFP ARAVAITFDD 
GLKSVSRYAY PVLKQYDMKA TAFIISSRIK RHPQKWNPRS LQFMSVSELR KISDVFDFQS 
HTHFLHRVDG HRRPILYSRS YHNILFDFER SRRALAQFTP HVFYLSYPFG GYNATAIKAA 
KDAGFHLAVT TVRGKVKPGD NPMLLKRLYI LRTDSLETMS RLISNQPQG