| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A0196 |
|---|
| Symbol | |
|---|
| ID | 6517480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | - |
|---|
| Start bp | 207277 |
|---|
| End bp | 207828 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642745364 |
|---|
| Product | putative fimbrial protein |
|---|
| Protein accession | YP_002113196 |
|---|
| Protein GI | 194738133 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.700219 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.468344 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCA CCTTAAAAAT ACTCGCTGTG GCACTGGCTG CCATCACCCT CTCCCCCGCC
GCGCTGGCAG ACACCGCCAA AGACGGCACC GTACATATCA CCGGCCTCAT TCAGCAAAAC
GCCTGTACGG TAAAAACGGA TTCAGTATTA ATAGAAGTGA CATTAAAGGA CGAATTTGCC
TCTATTTTTA CTGCCGCAGG GCAAACGGCA GGGGATAAAG GCTTCACCAT CGATCTCGAA
AACTGCGACG CAAACATCTA CAGCAATGTA CAGGCGCGCT TTGAAGGTAC GCTCGACGGA
ACCGATGCGA CCATCCTGAA AAATGATGCT GATGCTCAGA ATATTGGCGT GCAAATTCTT
GATAAAACGG GTGACAGTAC GCCAGTGACC TTTAACGATC TTCAGGCATG GTCTTCCGCA
GTCGCGCTCC CTACAGAAGA GGGGGTGACG ACACTCTCAA TGCCTTTCAC CGCCCGCTAT
ATCGCCACCG CGGTTCCCGT TGGGTCGGGA AATGTCGATG CAAGCGCAAC ATTCTATCTG
CAATATAACT GA
|
|---|
| Protein sequence | MKLTLKILAV ALAAITLSPA ALADTAKDGT VHITGLIQQN ACTVKTDSVL IEVTLKDEFA
SIFTAAGQTA GDKGFTIDLE NCDANIYSNV QARFEGTLDG TDATILKNDA DAQNIGVQIL
DKTGDSTPVT FNDLQAWSSA VALPTEEGVT TLSMPFTARY IATAVPVGSG NVDASATFYL
QYN
|
|---|
| |