| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A0194 |
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| Symbol | |
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| ID | 6516945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011094 |
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| Strand | - |
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| Start bp | 203973 |
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| End bp | 206519 |
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| Gene Length | 2547 bp |
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| Protein Length | 848 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642745362 |
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| Product | outer membrane usher protein FimD |
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| Protein accession | YP_002113194 |
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| Protein GI | 194736076 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.931496 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAAAG GGCAACACAG GGGATTTTAT TTATCGCGCT GCGCTGTGTG TATCGCGCTG
GGCAGCACGT TCGCACATGT TGCATGGGCG CGCGACTATT TCAATCCGGC ATTTATTGAA
CACCATGGGC AGGCGAATCG CACAAGCGTC GATCTGTCGA CATTTGATAA CGACAAAAGC
CAACTTCCTG GCACCTATTA CGTCACTATC ATTATCAACA AAACAGAAAT CGGCGCGCGA
AACGTTGATT TTCAACTCAC GACGCTCAGT GACGGTCAAC AGGCATTACA GGGCTGTTTA
CGGCTTCAGG AACTAAAAGA TAACGGCGTC AAAACCGACC TTTTTCCAAC GCTGGAGAGT
GAAAAAGGCT GCGTCGATCT CAGCGCTATC CCCGGCGCCA GCCAGCAGTT TGATTTTCAG
CAACAGGCAT TATCGATAAG CATCCCTCAA CTCTACATCG CCAACAACGC GCGCGGCTAC
GTGCCGCCGG AAAAGTGGCA GGAGGGGATT ACCGCGCTAA TGCTGAACTA CAGTTTCAGC
GGCTATAAAG AGTACGGTTC CAGTGACGAT TCCGACGATG CGGAATCGAA GTATCTCGCT
CTCCAGCCGG GTTTTAACCT CGGGCCGTGG CGTTTTCGCA ACTACAGTAA CTGGAGCGCA
AATAACGGCG AGAGCGGTAG CTGGAACAGC GTTTATAACT ATTTACAGCG CGACATTATC
GCGCTGAAAA GCCAGTTCAC CGCCGGAGAC AGCAATACGC CATCCGACGT GTTCGACAGC
GTACCTTTTC GCGGCCTCCA GCTCACCTCT GACGATCAAA TGCAGCCCAA CAGCCAGCGT
GGTTACGCCC CGACGATTCG CGGCATCGCC CGTTCAAACG CGCAGGTTAT CGTGCGGCAA
AACGGTTATA TCGCCTATCA AACTGCCGTT TCGCCGGGCG AATTTGAAAT CAACGATATG
TTTCCCACCG GCAGCAACGG CGACTACGAC GTGACGGTAA AAGAAGCCGA CGGTAGCGAA
CAGCATTTTA TCGTGCCCTA CTCTTCGCTG CCGATTCTGC AGCGCACCGG ACGGGCAAAA
TACAGCGTGA CCGTGGGTAA ATATCGTGAT TACGACAACC ACACGCTGGA CGACTTCGGC
CAGGCGACCC TGCTGTACGG CCTGCCGTGG GGTATCACGC TGTACGGCGG CAGCCAGATT
GCCGGCGATA AATACCAGTC CGTCGCCTTC GGCGTCGGGC AAAATATGCA GATGCTGGGG
GCCATTTCCC TGGACGGTAT CTGGTCGCAC GCCAAATTTG ACGATGGCCG CAAAGAAGCC
GGGCAATCCT GGCGCGTCCG CTACAGCAAG GGCGTCGTCA GTACGGGCAC CACGTTTTCG
CTGGCCGGCT ATCGTTACGC CAGCGAAAAC TACAATTCGC TGAGCGAGGT GATCAACCCG
GACGACGATT TTTATGATAA CTACGGCAAG CGCCATAATC GTTTCGAAGC TTCAGTCAAC
CAGCAAATTA GCGATACGCT CGGTTCCTTA ACGCTAAGTT GGGTAAAAGA AGATTACTGG
CACAGCGCGC AGCAGATGGA ATCTCTGAGC GCCAACTACA ACAATAGCTG GGGCCCGGTG
AGCTATACGT TAAGCTACAG CTATAACAAA AACACCTACC AGTACCGATC GGATAATGAC
GATGATGATA ACGACGACGA TCGTTATAAC CAGAACGATC GGCTGTTCAC GCTGTCGCTG
CATGTTCCGT TTACGGTGTT CGATTCCAGG CTATACGCCA GCTATATGCT GAACACGCGT
AAGCACGATG CTACGGTGAA CAGCACCACC CTTAGCGGCA CCGCGCTGCG TGACAGAAAC
CTGAACTGGT CGTTACAGCA GAGCCACAGC ACACAAGACG GTGATTCCGG CGGGGTAAAC
GCCAGCTACA AAGGCACTTA TGCCAACCTC AACGCCGGTT ACAATCAGTC GCCAGATAGC
CAACAGGTCA GCTACGGCAT CAGCGGCGGC ATTCTGGCGC ACGAAAACGG TATTACCCTG
AGCCAGCCGA TTACCGGCGC GGCGATTTTA ATTAAAGCGC CCGGCGCCAG CGGCGTTTCA
GTTGAAAACC AGACCGGCGT CGCCACCGAC TTCCGGGGTT ATACGGTGAT CCCCAACGTC
ACTCCGTATT ATCGCTACGA TATCTCGCTC GACAGCAGCA CGTTTGCCGA CAACGTGGAT
ATTCCGCTCA ACAACCAGAC CGTCTACCCG ACGCGTAATG CGGTGGTGCG CGCGGCGTAT
GACACGCATA AGGGCTATCG CGCGCTGTTA ACGCTGACGC GCAGCAATGG CGAGCCCGTG
CCCTTTGGCG CGACGGCAAG CGTCGATGGG CAGGATGCGA ACCTGGCCAG TATCGTCGGC
GATAAAGGCC AGGTCTTCCT CAGCGGCCTG CCGGAAGAGG GCCTGCTCCT GGTGAACTGG
GGAAGCGCCT CTTGCCGCGC GGATTACCGT CTGGATATCA GCAAAAATAT GAACGGCATA
GTGATGGCGA ACGCCGTCTG CCAGTGA
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| Protein sequence | MRKGQHRGFY LSRCAVCIAL GSTFAHVAWA RDYFNPAFIE HHGQANRTSV DLSTFDNDKS
QLPGTYYVTI IINKTEIGAR NVDFQLTTLS DGQQALQGCL RLQELKDNGV KTDLFPTLES
EKGCVDLSAI PGASQQFDFQ QQALSISIPQ LYIANNARGY VPPEKWQEGI TALMLNYSFS
GYKEYGSSDD SDDAESKYLA LQPGFNLGPW RFRNYSNWSA NNGESGSWNS VYNYLQRDII
ALKSQFTAGD SNTPSDVFDS VPFRGLQLTS DDQMQPNSQR GYAPTIRGIA RSNAQVIVRQ
NGYIAYQTAV SPGEFEINDM FPTGSNGDYD VTVKEADGSE QHFIVPYSSL PILQRTGRAK
YSVTVGKYRD YDNHTLDDFG QATLLYGLPW GITLYGGSQI AGDKYQSVAF GVGQNMQMLG
AISLDGIWSH AKFDDGRKEA GQSWRVRYSK GVVSTGTTFS LAGYRYASEN YNSLSEVINP
DDDFYDNYGK RHNRFEASVN QQISDTLGSL TLSWVKEDYW HSAQQMESLS ANYNNSWGPV
SYTLSYSYNK NTYQYRSDND DDDNDDDRYN QNDRLFTLSL HVPFTVFDSR LYASYMLNTR
KHDATVNSTT LSGTALRDRN LNWSLQQSHS TQDGDSGGVN ASYKGTYANL NAGYNQSPDS
QQVSYGISGG ILAHENGITL SQPITGAAIL IKAPGASGVS VENQTGVATD FRGYTVIPNV
TPYYRYDISL DSSTFADNVD IPLNNQTVYP TRNAVVRAAY DTHKGYRALL TLTRSNGEPV
PFGATASVDG QDANLASIVG DKGQVFLSGL PEEGLLLVNW GSASCRADYR LDISKNMNGI
VMANAVCQ
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