| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A0025 |
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| Symbol | |
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| ID | 6517109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011094 |
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| Strand | + |
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| Start bp | 25762 |
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| End bp | 28428 |
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| Gene Length | 2667 bp |
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| Protein Length | 888 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642745201 |
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| Product | outer membrane usher protein FimD |
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| Protein accession | YP_002113033 |
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| Protein GI | 194733954 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0588197 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0296149 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCGCAAC GACGCCAGCA CGCGTTTGTC CAGCTTCATG ATGTTATGCG TAATCAGCTT
TTCATGACGC GATATTACTC CAGCGTAGCT AAACCCGTAT TAACCCCGCT GGCGTTGGCT
ATCGCATTGG CGCCTGCGCC GGGGTGGGCG GAAAACTATT TCAACCCGGC ATTTCTGTCT
GACGACCCGT CTGCGGTGGC CGACTTATCG ACCTTTTCCC GTAATGCCCA GGCGGCGGGA
ATGTATCGCG TTGACGTTTA CCTGAACAAT ACGTTTCTCG CGACCAGAGA CATTGCCTTC
CAGGCGGTGA AAACGACGGG AAAAAGCGCG CCCACCGATG ACAGCGGATT ACGCGCCTGC
CTGACGCCTG AAATGCTTAA AAATATGGGG GTAAACACCG GGGCGTTTCC ACTGTTGGCG
AAGGCGGCGG CGGGAAGTTG CCCGGATCTC GCCAGTGCGA TACCGGCCGC CCGGACCCGC
TTTGATTTTG CGCAGCAACG TCTCGACATT AGCATCCCGC AGGCGGCGAT GGTTGCCAGC
GCCAGAGGCT ATATCCCACC GCAATACTGG GATGAAGGTA TTAACGCGTT GCTATTGAAT
TACACCTTTA CCGGCGCGAA TAGTCAGGAT CGGAGCGCAG GCGGCAGTGC GGAGAACAGC
TATTTTCTTG GATTGAATAG CGGCCTTAAT CTGGGGGCCT GGCGGTTACG CGACTACTCC
ACATGGAACG CGAATAGCGG CGATCAGAAT AGCGACAGCG ACTGGCAGCA CATCAGTACT
TATCTGGAAC GTGATGTGGT CTTTTTGCAG GGAGAACTGA CGGCAGGCGA TAGTTATACC
CCCTCCGCAT TATTCGACAG CATTCCTTTT CGCGGGCTAC AACTGGCGTC TGACGACAAT
ATGTTGCCAG ACAGCATGAA AGGCTTCGCG CCGACCATTC ACGGCATTGC CAGAAGCAAC
GCGCAAGTGA CCATTCGGCA AAACGGCTAC ATCATCAATC AGCGCTATGT GCCGCCCGGG
GCATTTACTA TTAATGATCT CTATCCCACC GCCGCCAGCG GCGATTTGAC TGTGGAAGTC
AAAGAGTCTG ACGGTTCTAT TAATCGCTAT AACGTGCCCT ATTCCGCCGT GCCGATTCTA
CAACGAGAAG GGCGGCTGAA GTATGCGGCG ACGGTGGCGG AGTATCGTAG CGATAGTAGT
CAAAAAGAGA AGGTGAAATT CACTCAGGCG ACCTTGATAT GGGGGTTACC GCATGGTTTT
ACGCTGTATG GCGGAACACA ACTTTCCAGT CATTATCACG CGCTGGCGAT CGGCAGCGGC
GCAAATCTGG GCGACTGGGG CGCGGTGTCG CTGGATGTCA CCCAGGCTAC CAGTACGCTG
GCGGATAATA ACACCTACCA GGGGCAATCG CTGCGTTTCC TGTATGCCAA ATCGCTTGCA
CAGTCAGGAA CCAATTTACA GCTTATGGGC TATCGCTATT CAACCTCGGG CTTTTATACG
CTGGATGATA CCACGTGGAA ACGGATGAGC GGCTATGACG ATGACAGTCG GACTGACAGC
GATAAAAGCA GGCCGGAATG GGCGGATTAT TACAATCTTT ATTATACCAG AAGGGGGAAA
GTACAACTCG ATATCAATCA ACAGCTAGGC GGGTTGGGAT CGCTTTTTAT TACCGGCAGT
CAACAAAGTT ACTGGCACAC TGATGAAAAG GATTCTTTGT TGCAGGTGGG ATACAGCGAT
ACGCTGGCGG GTATTGCATG GAGTGTTTCT TATAACAATA ACAAATCCGC AGGCGATGCG
GAGCGCGATC AAATTTTCGC GCTGAATATC TCGGTGCCGC TAAGTCAATG GCTGCAACAC
GATGATGAGG TTACGCGCCA TCACAATGTT TACGCTACCT TTAGCACCAG TACGGACAAA
CAGCATAACG TTACGCAGAA TGCGGGCCTT AGCGGCACAC TGCTGGACGA AAACAATCTT
AGTTACAACA TACAGCAAGG TTATCAAAAT CACGGTATTG GCGAAAGCGG CTCCGCCAGC
CTGGAATACG ATGGGGCGAA AGGCAACGCC AACATTGGCT ATAACGTTAG CGATAACGGC
GATTACCAGC AGGTGAATTA TGGCCTGAGC GGCGGCCTGG TGGCGCACGT GCATGGAGTG
ACGCTAAGCC AGCCGCTGGG CAATACCAAT ATTTTGATTG CCGCGCCGGG CGCAGCCAAC
GTCGGCGTTG TCGACCAGCC GGGTATTCAT ACGGACGCGC GTGGCTATGC GGTGGTGCCG
TATGCGACGA CATATCGCCA AAACCGTATG GCGCTGGACG TTAACGCGAT GGCTGATGAT
GTCGATATTG ATGACGCGGT GACTCGCGTT GTGCCGACCG AAGGCGCGCT GGTTCTGGCC
CGCTTTAAAG CGCGAGTCGG CGCGCGTGCC CTGGTAACGC TGAATCATAA CGGTAAGCCT
GTACCCTTTG GCGCAACGGT GACGGTGAAT GATCGTCATG CGGAGGCGAT TGTTGACGAG
GCCGGGGAAG TCTATCTTTC CGGGTTGTCA GCGCAAGGCA TTCTGCACGT TCGCTGGGGG
AACCTGCCGG ATCAACAGTG TGTCGCGTCC TATCATCTCT CTTCCTCCCG TCAGATTCTG
AGTCGACAAC ATGCGGAGTG TCATTAA
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| Protein sequence | MAQRRQHAFV QLHDVMRNQL FMTRYYSSVA KPVLTPLALA IALAPAPGWA ENYFNPAFLS
DDPSAVADLS TFSRNAQAAG MYRVDVYLNN TFLATRDIAF QAVKTTGKSA PTDDSGLRAC
LTPEMLKNMG VNTGAFPLLA KAAAGSCPDL ASAIPAARTR FDFAQQRLDI SIPQAAMVAS
ARGYIPPQYW DEGINALLLN YTFTGANSQD RSAGGSAENS YFLGLNSGLN LGAWRLRDYS
TWNANSGDQN SDSDWQHIST YLERDVVFLQ GELTAGDSYT PSALFDSIPF RGLQLASDDN
MLPDSMKGFA PTIHGIARSN AQVTIRQNGY IINQRYVPPG AFTINDLYPT AASGDLTVEV
KESDGSINRY NVPYSAVPIL QREGRLKYAA TVAEYRSDSS QKEKVKFTQA TLIWGLPHGF
TLYGGTQLSS HYHALAIGSG ANLGDWGAVS LDVTQATSTL ADNNTYQGQS LRFLYAKSLA
QSGTNLQLMG YRYSTSGFYT LDDTTWKRMS GYDDDSRTDS DKSRPEWADY YNLYYTRRGK
VQLDINQQLG GLGSLFITGS QQSYWHTDEK DSLLQVGYSD TLAGIAWSVS YNNNKSAGDA
ERDQIFALNI SVPLSQWLQH DDEVTRHHNV YATFSTSTDK QHNVTQNAGL SGTLLDENNL
SYNIQQGYQN HGIGESGSAS LEYDGAKGNA NIGYNVSDNG DYQQVNYGLS GGLVAHVHGV
TLSQPLGNTN ILIAAPGAAN VGVVDQPGIH TDARGYAVVP YATTYRQNRM ALDVNAMADD
VDIDDAVTRV VPTEGALVLA RFKARVGARA LVTLNHNGKP VPFGATVTVN DRHAEAIVDE
AGEVYLSGLS AQGILHVRWG NLPDQQCVAS YHLSSSRQIL SRQHAECH
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