Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C5003 |
Symbol | |
ID | 6490453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | - |
Start bp | 4880848 |
End bp | 4883277 |
Gene Length | 2430 bp |
Protein Length | 809 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642745045 |
Product | outer membrane usher protein SfmD |
Protein accession | YP_002048614 |
Protein GI | 194451437 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 74 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGAAAATG ATGAACCGGG CGTGGAGAAT GTCGATCTAT CGGTTTTCGA AAAGGGGGGG CAGGCAGAAG GCACCTATAA TGTTGATATT TATATTAATA ACACCAGTGT TGAAACAAAA AATATTGCCT TTAAAAATAA AAAATCAGCA GATAATAAGC TCTCCCTACA GCCGTGTCTT AGCGTTGAAC AACTCAAGCA GTGGGGCGTA AAAACAGAAA ACTTCCCCGA GCTTAAAAAT GACCCAAACG GGTGTACCGA TCTTAGTCTG CTGGCTGGCG CTGTAGCAAA GTTTAATGTC ATCGGTAACC GGCTGGATTT AGCGATCCCT CAAATCGCGT TGATCGCCGA CCCGCGAGAA TTCGTCCCTA CCAGCGAATG GGATGAAGGC ATTAATGCTT TTTTGCTGAA CTACAGTTTT ACCGGATCGC AGGATCACGA TATTGATGAA AACCGGACGG AAAATAGCGA ATACGCTAAC CTGCGCCCTG GTATTAACAT TGGCGCATGG CGTTTTCGTA ACTACTCAAC CTGGAATCAT GATAGCGATG GGCAAAATAG CTGGGATTCT GCCTACACCT ATGTTTCTCG CGATATCGAA TTTTTAAAAG GACAGCTGAT CGCCGGGGAA AATAACACGC CCGCGGACGT CTTTGACAGT ATTTCATTTA AAGGCGTACA GATCTCTTCT GATGACGATA TGTTGCCGGA CAGTATGAAA GGGTTCGCCC CGGTCATTCG CGGGGTGGCC AAAAGCAGCG CGCAGGTAAC CGTTGAACAA AACGGTTATA CCATCTACAA AACTAACGTT CCGGCGGGTC CATTCGCCAT CAACGATCTT TATCCAACCG GCGGTTCGGG CGACCTGTAC GTCACCATCA AAGAATCCGA TGGTTCTGAA CAGCATTTCA TTGTGCCCTA CGCCAGCGTT CCGGTATTAC AGCGTGAAGG CCACCTGAAA TACGACCTGA CGGTAGGCCG CACGCGTTCA TCAGATACGC ATTCCGCGCA ACAGAACTTC GCTGAACTGA CGGCCTTATA CGGATTAGCA GGCGGCATAA CCGCCTATGG CGGAATAGAG AGTACGCTGA GCAATGATGT TTATCATGCG GCGCTCATCG GGACAGGCTT AAACCTTGGC GATCTGGGCG CATTGTCTTT AGACGTCACC AACTCATGGT CAAAAATTAA AGCAGGCGAT GTGGTTAGCG ATACGCTTAC CGGACAATCC TGGCGTATTC GTTACAGCAA AGATATTCAG TCAACAGGCA CCAATTTCAC TGTCGCCGGC TACCGTTATT CGACCAAAGA TTACTACGCT CTTGAGGATG TGCTGGATAC CTATAGCGAT AATAGTCACT ATGATCATGT ACGTAATCGC ACCGACCTGT CGTTATCGCA AGACATTATC TACGGTTCCA TTTCACTCAC TTTATATAAT GAAGATTACT GGAATGACAC TCATACCACA TCATTAGGTA TTGGCTATAA CAACACATGG CATAACGTAA GCTATGGCAT TAACTATTCT TATACGCTGA ACGCCGATAA TTCTCAGGAT GAAGACGACG ATACGGAAGA CAGTAATGAC CAGCAAATTT CAATCAATAT TAGTATTCCG TTAGATGCCT TTATGCCGTC AACGTATGCC ACCTACAATA TGAACTCCGC GAAAGACGGC GATACCACGC ATACTGTCGG TTTAAACGGA ACAGCGCTGG CACAGAAAAA TCTCTCATGG AGCGTTCAGG AAGGTTATTC CTCTCAAGAG AAAGCCACCA GCGGTAATGT GAGCGCAACC TATAACGGGA CGTATGCGGA TATTAACGGC GGATATAGCT ACGATAATCA TATGCGTCGC CTGAATTATG GCGTTCAGGG CGGCGTACTA CTACATCGAA ATGGCCTGAC ACTATCCCAG CCAATGGACG ACACCATCAT ATTGGTTAAA GCACCTGGCG CAGCGGGTGT CCCCGTGAAT AACGAAACGG GCGTGGACAC CGATTTTCGC GGGTATGCCG TCGTACCTTA TGCTTCGCCT TACCATCGTA ATGAAGTGTC TTTAGATACG ACGGGCATTA GAAAAAATAT TGAGCTCATT GATACCAGTA AAACGCTGGT GCCTACCCGT GGCGCGGTGG TCAGGGCTGA ATATAAAACC AATATTGGTT ACAAGGCATT GATGGTATTA ACCCGCATAA ACAATCTGCC TGTTCCTTTT GGCGCGACCG TCTCGTCTTT AACAAAACCA GACAATCACA GCAGTTTTGT TGGTGATGCG GGGCAAGCCT GGTTAACCGG ACTGGAAAAA CAAGGGCGGT TATTAGTGAA GTGGGGACCA ACAGCAGCAG ACCGGTGTCA GGTCTCTTAT CGTATACCGA GCTCCCCCTC CGCTTCTGGC GTAGAAATCT TACACGAGCA ATGCCAGTAA
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Protein sequence | MENDEPGVEN VDLSVFEKGG QAEGTYNVDI YINNTSVETK NIAFKNKKSA DNKLSLQPCL SVEQLKQWGV KTENFPELKN DPNGCTDLSL LAGAVAKFNV IGNRLDLAIP QIALIADPRE FVPTSEWDEG INAFLLNYSF TGSQDHDIDE NRTENSEYAN LRPGINIGAW RFRNYSTWNH DSDGQNSWDS AYTYVSRDIE FLKGQLIAGE NNTPADVFDS ISFKGVQISS DDDMLPDSMK GFAPVIRGVA KSSAQVTVEQ NGYTIYKTNV PAGPFAINDL YPTGGSGDLY VTIKESDGSE QHFIVPYASV PVLQREGHLK YDLTVGRTRS SDTHSAQQNF AELTALYGLA GGITAYGGIE STLSNDVYHA ALIGTGLNLG DLGALSLDVT NSWSKIKAGD VVSDTLTGQS WRIRYSKDIQ STGTNFTVAG YRYSTKDYYA LEDVLDTYSD NSHYDHVRNR TDLSLSQDII YGSISLTLYN EDYWNDTHTT SLGIGYNNTW HNVSYGINYS YTLNADNSQD EDDDTEDSND QQISINISIP LDAFMPSTYA TYNMNSAKDG DTTHTVGLNG TALAQKNLSW SVQEGYSSQE KATSGNVSAT YNGTYADING GYSYDNHMRR LNYGVQGGVL LHRNGLTLSQ PMDDTIILVK APGAAGVPVN NETGVDTDFR GYAVVPYASP YHRNEVSLDT TGIRKNIELI DTSKTLVPTR GAVVRAEYKT NIGYKALMVL TRINNLPVPF GATVSSLTKP DNHSSFVGDA GQAWLTGLEK QGRLLVKWGP TAADRCQVSY RIPSSPSASG VEILHEQCQ
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