Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C4980 |
Symbol | |
ID | 6488349 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | - |
Start bp | 4857813 |
End bp | 4860221 |
Gene Length | 2409 bp |
Protein Length | 802 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642745023 |
Product | fimbrial usher protein |
Protein accession | YP_002048592 |
Protein GI | 194449966 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 84 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGTATT TAAAACTGCC GCTATACATC AAAACTGCGC TTTATTGCTC ACTGGCAACC ACGACGTTTT CAGCTCTGGC GGAGGAGCTG AATTTTGACA TGGGTATTCT CACCTCCAGA GGCATTAGCC CCAACGTCGC ACAATATTTT TCCCGCGCGC CGCGCTTTCT ACCAGGCAGC CACACCGTCA TGGTAAAGAT CAATGGCGTA AATAGAGGGT CGTTGGTCGC GCGTTTCGAC ACAGAAGGCC AGCTTTGCGT GGATGACGAT TTCCTCAGCG CCAGCGGGCT CGTTTCGCTT AATATCAGCG CCAAAGAAAC CTGCCATAGC CTACAAGAAG ATTATCCCTC AGCGATTATT ACCCCACTGC CAAACAGTGA ATCGCTGGAG CTTTTTGTTC CGGCACAGGC TCTGGATAAT AACTTACTAT CGCTAAACAA CGTGATTAAA GGCGGCACCG CCGGGTTATT TAACTATAAC CTGTACGCCA GTCGCAGCGA ATCATCCGGT AGCGATAGCC GAAACTATGC CCAGGCAAAC CTTGAAGCTG GCTTAAACTT CGCGGAATGG ACGCTGCGCA GCCGCTACAT GCTGACGAAT AATGATGGAG AATACCGTAC CGATAGTCTA TATACCTATG CGGAGCACGT ATTTCAGGCA CAAAAAATGC GTGCGCAAGT TGGGCAGATC AACGTCAACT CCAGTCTATT CAGTGGCGCG CCGATCAACG GCGTACAGCT TATCCCTGAA CAAGGGCTGG CACAGGATAC ACAAGGCGTA ACCATTAACG GTATTGCCCG AACCCACCAG GCTCGCGTTG AAGTTCGTCA GTCCGGACAG ATTATTTATA CCGCACCAGT GAACGCTGGG GCATTTACCC TTGAAAATGT CCCCATCATA CGCAGCAATA CCGACCTTAA CGTCAGCGTC GTTGAAACCG ATGGCTCAAC GACAACCTTC ACGGTGCCGG CAGTATCCTT TAATTTACGC GAACTCACGC CCGCAGGCTT AACAATGTCC ATAGGGCGCA TACGTGATAC CACCAGCGAC TATTCGCTCC CCTGGATCTA TAACATCAGC GATGGTTGGA AACTGAGTGA AAACTGGCTG GCGCAGGCGT CTGGCGTACT GGCACAAGAC TATCAAGCGG CAGGAGGGAT GCTGCAATGG CTTCCAACCA ATAAATGGAC GTTTTCCGGC TCAATGCTGG GCAGTAAAGC GTCCTTTGGC GAATCTCTGC AGGGTGCGAA AAGTGAACTA CGCGCCAGCA TGGCGCTGCC CGGGGAAATT AGACTTGACG TCAGTACCGC CCGCTACAGC GACGGATATC GTGAGTTAAC GGATGCGCTC AATAAAGATG CTTACGAATA TCAAAGTAGC TCCAGTGCTA ATATTGCCTG GAACCATAAT CTGTTAGGTA CCTTCTCTCT GGGTTATTAC ACTTATCAGG CTACGGATAA TGACAACGAC TCTCGCAGTA TAATGGCTTC CTGGGGCAAA ACGTTTAAAT ATGCCTCAAT TACCGCTAAC TGGCAGCACG CTGTTAATCA GGATGATGAG AATCATAACG ACAGTAATGA TGATGATATG TTTTACATCA ACATCAGCAT TCCACTAGGT GAGCAGCGCG TCGGCGCTTA TATGCGTAAT CAAGGTGATA AAACAACCTA CGGGCTACAA AATAATGGTT CGCTGAGTAA AGATACCCAT TACTATATTT CTGCGGATCG TGATGCAAAA AACCAGCAAA ATAGCTTCAA CGGTAATCTC AATAGCAATC TTCATTACAC TCAACTCAGC GTGGGCGGCG GCACTGATGG CGATAATTAC CGCAACTATA ACGCAACCTT CAGCGGAGGC ATCGCTGCAC ACGAACATGG CATAACGTTC TCGCCTTATA CAATCAAAAA TACCTTTGCT ATCGCACGCC TGAGTGAACC AGAAAGCGGC ATTGAAATCG CCACGCCACA GGGGCGAATC TGGACTGACC ACTGGGGGCA AGCCGTCATT CCGGGGCTAA CTGAATGGCG GAAATCCCGC GTAGAGGTTA ATGCGAATAC GCTACCAAAG AGTATGGAAC TGGCAAACGG TATTAAGAAT ATTACCGTCG CGCACAGCGC TTTTCGGGTA CTGGATTTCA ACGTGCTGAA TACACGCCGT GTGATGCTGG CAGTAAAGCG TCCGGATGGC TCATGGCTAC CTAAAGGCAC CAGCATTGTA GATGAAAAAA ATAACTATTT GGTCAGCGCT GTCGACAGCG GACGCGTATT TATCACCGAT GTTGGGGATA ATCCTGCGTT ATATGCCGCT GATGATGATA TGAATCGTCT GTGTCGCATC CACTACACGC TGCAGAAAAC CCAGGATAAA GAGGCATTTT ATGAAACGGC AAAGGGAGTC TGTCAATGA
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Protein sequence | MKYLKLPLYI KTALYCSLAT TTFSALAEEL NFDMGILTSR GISPNVAQYF SRAPRFLPGS HTVMVKINGV NRGSLVARFD TEGQLCVDDD FLSASGLVSL NISAKETCHS LQEDYPSAII TPLPNSESLE LFVPAQALDN NLLSLNNVIK GGTAGLFNYN LYASRSESSG SDSRNYAQAN LEAGLNFAEW TLRSRYMLTN NDGEYRTDSL YTYAEHVFQA QKMRAQVGQI NVNSSLFSGA PINGVQLIPE QGLAQDTQGV TINGIARTHQ ARVEVRQSGQ IIYTAPVNAG AFTLENVPII RSNTDLNVSV VETDGSTTTF TVPAVSFNLR ELTPAGLTMS IGRIRDTTSD YSLPWIYNIS DGWKLSENWL AQASGVLAQD YQAAGGMLQW LPTNKWTFSG SMLGSKASFG ESLQGAKSEL RASMALPGEI RLDVSTARYS DGYRELTDAL NKDAYEYQSS SSANIAWNHN LLGTFSLGYY TYQATDNDND SRSIMASWGK TFKYASITAN WQHAVNQDDE NHNDSNDDDM FYINISIPLG EQRVGAYMRN QGDKTTYGLQ NNGSLSKDTH YYISADRDAK NQQNSFNGNL NSNLHYTQLS VGGGTDGDNY RNYNATFSGG IAAHEHGITF SPYTIKNTFA IARLSEPESG IEIATPQGRI WTDHWGQAVI PGLTEWRKSR VEVNANTLPK SMELANGIKN ITVAHSAFRV LDFNVLNTRR VMLAVKRPDG SWLPKGTSIV DEKNNYLVSA VDSGRVFITD VGDNPALYAA DDDMNRLCRI HYTLQKTQDK EAFYETAKGV CQ
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