Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C4786 |
Symbol | rnr |
ID | 6489050 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | + |
Start bp | 4665004 |
End bp | 4667442 |
Gene Length | 2439 bp |
Protein Length | 812 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642744838 |
Product | exoribonuclease R |
Protein accession | YP_002048411 |
Protein GI | 194450737 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 68 |
Fosmid unclonability p-value | 0.717168 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACAAG ATCCTTTCCA GGAACGCGAA GCAGAAAAAT ACGCGAATCC TATCCCGAGC CGGGAATTTA TCCTCGAACA TTTAACGAAA CGTGAAAAAC CGGCCAGTCG CGAAGAACTG GCCGTAGAAC TGAATATTGA AGGCGAAGAG CAGCTTGAAG CCTTGCGTCG CCGCCTGCGC GCGATGGAGC GCGACGGACA ACTGGTCTTT ACCCGCCGCC AGTGCTATGC GCTGCCGGAA CGCCTCGACC TGCTGAAAGG CACCGTGATC GGTCATCGTG ACGGTTACGG TTTCTTACGT GTCGAAGGCC GCAAAGACGA TCTGTATCTT TCCAGCGAGC AGATGAAAAC CTGTATTCAT GGCGATCAGG TGCTGGCGCA GCCGCTGGGC GCCGATCGTA AAGGTCGCCG CGAAGCGCGT ATCGTCCGTG TACTGGTACC GAAAACCAGT CAGATAGTCG GGCGTTATTT CACCGATGCG GGCGTCGGCT TTGTGGTGCC GGACGACAGC CGTCTCAGCT TCGACATTCT TATCCCGCCA GAAGACGTCA TGGGCGCGCG GATGGGGTTC GTGGTCGTGG TTGAACTGAC CCAACGTCCA ACTCGCCGTA CTAAAGCGGT AGGGAAAATC GTCGAAGTGC TGGGCGACAA TATGGGCACC GGTATGGCGG TTGATATGGC GCTGCGTACC CATGAAATAC CTTACATCTG GCCGCAGGCG GTAGAGCAGC AGGTCGCCGG GCTGAAAGAA GAGGTGCCGG AAGAGGCGAA AGTCGGTCGT GTCGATCTGC GCGATTTGCC GCTGGTCACG ATTGATGGCG AAGATGCCCG TGACTTTGAC GACGCGGTTT ACTGTGAGAA AAAACGCGGC GGCGGCTGGC GTTTGTGGGT CGCTATTGCT GATGTGAGCT ATTATGTACG GCCGCCAACG CCGCTGGATC GCGAGGCGCG CAATCGCGGC ACGTCGGTTT ACTTCCCGTC ACAGGTTGTC CCAATGTTGC CGGAGGTGCT CTCCAACGGT CTGTGTTCGC TAAACCCGCA GGTTGACAGG CTGTGTATGG TCTGTGAAAT GACCATCTCG GCAAAAGGTC GGCTGACCGG CTACAAATTC TATGAAGCGG TGATGAGCTC CCATGCGCGT CTGACCTATA CCAAAGTCTG GCATATGCTG CAGGGCGATC AGGATCTGCG TGAACAATAT GCGCCGCTGG TGAAGCATAT TGAAGAGCTG CACAACCTCT ACAAAGTGCT GGATAAAGCG CGTGAAGAGC GCGGGGGGAT CTCGTTTGAG AGCGAAGAGG CGAAGTTTAT CTTTAACGCC GAACGTCGCA TTGAGCGTAT CGAACAGACC CAGCGTAATG ACGCGCATAA GCTTATCGAA GAGTGCATGA TCATGGCGAA TATCTCGGCG GCGCGCTTTG TCGAAAAAGC TAAAGAGCCG GCGCTATTCC GTATTCATGA TAAGCCCACC ACCGAAGCGA TCACCTCATT CCGTTCCGTA CTGGCGGAGC TGGGATTGGA GCTGCCGGGC GGAAATAAAC CGGAACCGCG CGATTATGCC GAACTGCTTG AATCGATTGC CGACCGGCCG GACGCCGAAA TGCTGCAAAC TATGCTGCTG CGTTCAATGA AGCAGGCGAT TTACGATCCG GAAAACCGCG GGCACTTTGG CCTGGCGTTG CAGTCTTATG CGCACTTTAC CTCGCCGATT CGCCGCTATC CGGATCTTTC TTTGCACCGC GCCATTAAGT ACCTGCTGGC GAAAGAGCAA GGGAACAAGG GCAACACCAC AGAAACGGGC GGTTATCACT ACTCGATGGA AGAGATGTTG CAGCTCGGCC AGCACTGTTC GATGGCGGAA CGCCGCGCTG ATGAAGCGAC GCGTGATGTC TCCGACTGGC TGAAATGTGA CTTTATGCTG GATCAGGTAG GCAACGTCTT TAAGGGCGTG ATTGCCAGCG TCACCGGTTT CGGCTTCTTT GTCCGTCTTG ATGAACTGTT TATCGATGGG CTGGTACACG TTTCCTCACT GGATAACGAT TACTATCGCT TCGATCAGGT AGGGCAACGT CTGATTGGCG AGTCCGGCGG GCAGACATAT CGCCTGGGCG ACCGGGTCGA GGTACGCGTC GAAGCGGTGA ATATGGACGA ACGGAAAATT GACTTTAGCT TGATCTCCAG CGAGCGCGCA CCGCGTAACG TCGGCAAAAC GGCGCGTGAA AAAGCGAAAA AAGGTGAAAG TAAAAACGCC GGTAAACGTC GTCAGGTAGG TAAAAAAGTT AACTTCGAGC CTGATAGCGC CTTCCGCGGC GAGAAAAAAG CGAAGCCGAA AGCAGCGAAG AAAGATGCGA GAAAAGCAAA AAAGCCATCG GCTAAAACGC AGAAAATAGC CGCAGCGACC AAAGCGAAGC GTGCGGCGAA GAAAAAAGCG GCAGAGTGA
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Protein sequence | MSQDPFQERE AEKYANPIPS REFILEHLTK REKPASREEL AVELNIEGEE QLEALRRRLR AMERDGQLVF TRRQCYALPE RLDLLKGTVI GHRDGYGFLR VEGRKDDLYL SSEQMKTCIH GDQVLAQPLG ADRKGRREAR IVRVLVPKTS QIVGRYFTDA GVGFVVPDDS RLSFDILIPP EDVMGARMGF VVVVELTQRP TRRTKAVGKI VEVLGDNMGT GMAVDMALRT HEIPYIWPQA VEQQVAGLKE EVPEEAKVGR VDLRDLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA DVSYYVRPPT PLDREARNRG TSVYFPSQVV PMLPEVLSNG LCSLNPQVDR LCMVCEMTIS AKGRLTGYKF YEAVMSSHAR LTYTKVWHML QGDQDLREQY APLVKHIEEL HNLYKVLDKA REERGGISFE SEEAKFIFNA ERRIERIEQT QRNDAHKLIE ECMIMANISA ARFVEKAKEP ALFRIHDKPT TEAITSFRSV LAELGLELPG GNKPEPRDYA ELLESIADRP DAEMLQTMLL RSMKQAIYDP ENRGHFGLAL QSYAHFTSPI RRYPDLSLHR AIKYLLAKEQ GNKGNTTETG GYHYSMEEML QLGQHCSMAE RRADEATRDV SDWLKCDFML DQVGNVFKGV IASVTGFGFF VRLDELFIDG LVHVSSLDND YYRFDQVGQR LIGESGGQTY RLGDRVEVRV EAVNMDERKI DFSLISSERA PRNVGKTARE KAKKGESKNA GKRRQVGKKV NFEPDSAFRG EKKAKPKAAK KDARKAKKPS AKTQKIAAAT KAKRAAKKKA AE
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