| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C4130 |
|---|
| Symbol | dsdC |
|---|
| ID | 6489864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | - |
|---|
| Start bp | 4016158 |
|---|
| End bp | 4017081 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642744226 |
|---|
| Product | DNA-binding transcriptional regulator DsdC |
|---|
| Protein accession | YP_002047830 |
|---|
| Protein GI | 194447994 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR02036] D-serine deaminase transcriptional activator |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.10241 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 102 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCCC TTCGCGATAC CCGAAACCGC TTACTCAACG GCTGGCAGTT ATCCAAACTC
TATACTTTTG AAGTCGCGGC CAGACACCAG TCCTTTGCTC TGGCGGCAGA TGAGCTGTCG
TTAAGCCCCA GTGCGGTAAG CCATCGTATC AATCAACTGG AAGCCGAGTT GGGAATCCAG
CTATTTGTCC GCTCTCACCG TAAAGTGGAG CTTACCCATG AAGGCAAACG GGTATTCTGG
GCGCTGAAAT CGTCGCTGGA TACGTTGAAT CAGGAAATCC TCGATATCAA AAATCAGGAA
CTGTCCGGCA CGCTGACCGT GTATTCACGT CCCTCTATCG CCCAGTGCTG GCTGGTGCCT
GCGCTGGGGG ACTTTACCCG TCGCTATCCG TCAATTTCTC TCACTATGCT GACCGGCAAC
GATAACGTTA ACCTACAGCG TGCCGGCATT GACCTGGCTA TCTATTTTGA CGATGCGCCG
TCGGCGCAGC TCACGCACCA TTTTTTAATG GATGAGGCGA TTTTGCCCGT TTGCAGCCCG
GATTACGCCC GACGTTTCGC CTTGCAGGAC AACCTGAATA ACCTGCGGCA CTGTACGCTC
TTACACGACA GACAGGCGTG GAGTAACGAT TCGGGCACCG ATGAGTGGCA CAGTTGGGCG
CAGCATTTTG CAGTAAATTT GCCGGATTCA TCCGGCATTG GCTTCGACCG TTCTGATTTA
GCGGTGATTG CCGCGATGAA CCACATTGGC GTGGCGATGG GGCGTAAACG GCTGGTGCAA
AAGCGTCTCG ACAGCGGTGA ACTGATTGCG CCTTTTGGTG ACATGAGGCT GAAATGTCAT
CAGCATTATT ATGTCACCAC TCTGCCTGGC AGGCAGTGGC CGAAAATCGA GGCATTTATT
CGCTGGCTGC AGGAACAGGT GTGA
|
|---|
| Protein sequence | MEPLRDTRNR LLNGWQLSKL YTFEVAARHQ SFALAADELS LSPSAVSHRI NQLEAELGIQ
LFVRSHRKVE LTHEGKRVFW ALKSSLDTLN QEILDIKNQE LSGTLTVYSR PSIAQCWLVP
ALGDFTRRYP SISLTMLTGN DNVNLQRAGI DLAIYFDDAP SAQLTHHFLM DEAILPVCSP
DYARRFALQD NLNNLRHCTL LHDRQAWSND SGTDEWHSWA QHFAVNLPDS SGIGFDRSDL
AVIAAMNHIG VAMGRKRLVQ KRLDSGELIA PFGDMRLKCH QHYYVTTLPG RQWPKIEAFI
RWLQEQV
|
|---|
| |