Gene SeHA_C4103 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C4103 
Symbol 
ID6491413 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand
Start bp3986758 
End bp3989556 
Gene Length2799 bp 
Protein Length932 aa 
Translation table11 
GC content55% 
IMG OID642744200 
Productsigma-54 dependent transcription regulator 
Protein accessionYP_002047804 
Protein GI194451823 
COG category[K] Transcription 
COG ID[COG3933] Transcriptional antiterminator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones92 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACGTA TTGAGATCGT ACTGGGAGAG CTGGAACGGC TGACGCGCGG GCTATGTCTT 
GCCGATTTGG CGCAGGAGAC GGCGTTTACG GCGGAGGCGA TAGGTTTCAA TCTTGGGCTG
GCGCGTAACT CCGTCAGCAA AGATCTCAAT CAGTTATGGA ATGACGGCCT GGCAATCAAA
AGCCGTGGCC GCCCGGTCTA TTTTCTGCAT CGCCAGGCGC TGGAAACGTT GCTGGGACGA
CAGCTGGAAG AGTCTGAACG CGAGGTGCGG TCGGTGGCGG ATGTGCTGCC GCATGAAGAG
CATTACGCGC CCGACGATCC GTTTACCAGC CTGATTGGTT ACGATCGCAG CCTGCGCGAT
GCGGTAGAAA AAGGCCGTGC GGCGGTGCTC TATCCGCACG GTTTACACGT TCTGCTTACC
GGGCCGTCCG GCGTCGGTAA AACCTTTTTT GCGGAACTGA TGCACCGTTT CGCCTGTGAA
CAGGCGAGCG GCGCTATCCC GCCGCTGGTC TACTTTAACT GCGCGGAATA CGCCCATAAC
CCGGAACTGC TCTCCTCGCA TCTGTTTGGT CATCGGCAGG GGGCGTTTAC CGGCGCGAAT
GAACATAAAA CAGGCCTCGT GGAGCAGGCG GACGGTGGTT ATCTGCTGCT GGACGAGGTG
CACCGTCTGT CTTATGAAGG GCAGGAAAAG CTGTTCTCTA TTCTGGATAA AGGCGAGTAC
CGTCCGCTCG GCGTGAGCAG CCAGCCGCGA TCAATTTCGG TACGCCTGAT TTGCGCCACT
ACCGAGCCGG TCGGGTCGGC GCTGTTACGT ACTTTCCAGC GGCGTATTCA GGTATGCATT
GATTTGCCGG GTATTCGCCA GCGCTCCGTT GAAGAACAGA TCGAACTGAT CGTGGGGTTC
TTACAACGGG AAAGCCGCAA AATAGAACGC ACGGTCAGCA TTGATAAACC GTTGTTGCTC
TGGTTGCTGA ATAAACCCCT TGAAGGCAAT ATCGGTCAGC TAAAAAGCGA TATTCAGTTT
CTCTGCGCTC AGGCGTGGGC ATCGGGAATG ACCGAGCATA ACGACACGCT ACAGCTGGAT
AAGCGGCTGG CGGAGATGTC GATTAACCCG ACGCCGGAAC AGCGTCTATT GGTGGATACT
CTGTTTGAGG GTAAAGCGCG GCTAAATATA GACGCGCGCA CGCTGCCCGC ATTGAAGACG
TCGCTGGCGA CCGGGGCGGA AATTGAAGAG AGCGACCTCT TTTACAGCTT CCTGACGCGC
GAATATGTTA ATTTGCGCAA CAGTAACGTC CCCCCGGCGG AGACGCTGGC GATCCTGAAA
AATAAACTCA GCTCGATTTT TGAATACGGT CTCTACAGCC GCGACAGCGT GGCGCATCCG
CCGCGCTATG GCGACCAGAT TGAAGAGCGC GTGACGCTGC TGATTGGCTG CGTAGAGCAG
GTGTTGGGCT TTTCGCTGCC GGAAAATCTG GTTAACCCAC TGCGTAAACA CTTCCTGGCG
CTGATAGGCT ACGTGCAGCG CGGCCTGATC CCGCAGCTTT ACTCTTCCAG TTTGATCCTG
GATCGCTGCA AAGACGAATA TGACAACGCC ACGCTGCTGT GTCGGAAAAT CAACGAACTG
CTGCATATTC AGTGTCCGGC GACGGAAGTG GTCTGGCTAT GCCTGTTCCT GAAAGAGTGC
CGCCATTATC GTCAGCGCAT CGATGCCAGC CCCGACTGCG GGGTTATTTT AATCGCCCAC
GGCGCGACCA CCGCCACCAG TCAGGCGCAA TATGTCAACC GCGTGCTGGA GCGCGAGTTG
TTCAGCGCCA TCGACATGCC GTTTGAACAG TCGGTGCATG ACACGCTGGA AACGCTGACC
CAAATGATTC AAACCCGCCA ATATCGGCGG CTTATCCTGT TGGTGGACAT CGGCTCATTG
ATCCATTTCG GCAGTACGAT CAGTAAGTTA TTCCAGATAG ATGTTTTGCT CATGCCGAAC
ATCACGCTGA CCAGTCTGCT GGAAGTCGGG CTGGATTTAA GCTATGAAAC CAGCGACTTA
CCACAGTTGA CGGCGCTCCT GCAGAGTAAA AATATCCCCT GCCAGCTTTG TACGCCGCAG
CAGGAGAACG GCGGCAAAGT GCTGGTCATC TCCTGTATTA CTGGCATGGG AACGGCGGAA
AAAATCAAAA AGGTGCTGGA GGAGAGCTTT GGCGAACTGA TGTCGCAGGA CACCAGGATG
GTGATCCTTG ATTATAACGA GGTACGAAGT CTGGAGCGCG TTCAGCAGGC ATTGAATGCC
AGCGAGCGGC TGGCGGGGAT TGTCGGCACT TTCCAGCCGG GGCTGCCGGA TATTCCGTTT
ATTTCGCTGG AAGAGCTTTT CTCCGAACAA GGGCCGGAAC TGGTGTTGAG CCTGTTAACG
CCCGATCTGT CCAACGCTGA ACGCCGTCTG GAGATGGAGC GCAGCGCCAT GCGCTTTATC
AGCGCGCTAA CGATGGAGAG TATCATCAAC CATATTTCCG TGCTTAACCC GCAGCGTATT
CTGAAAGAGA TGGAGGGCGT TTTTAACCAT CTGACGTCTT CGCTTTCCCT GAAACCAAGC
CGCCAGGTGA CACTGCGCTT CCTGATCCAC TGCTGCTGTA TGGTAGAGCG TATTGTGATT
AACCGAAAAC CGTTACAGAT GGCGTTGGAA AGTCAGCCGA ATCTGGACGC GCGCGCGTTT
AGTGTCATCA AATCCGCTTT TCTGCCGATC GAAGACGCCT ACGCCATCCG TTTATCGGAT
GCGGAATATT TTTATATCTA CGAACTGCTC TATAGTTAA
 
Protein sequence
MRRIEIVLGE LERLTRGLCL ADLAQETAFT AEAIGFNLGL ARNSVSKDLN QLWNDGLAIK 
SRGRPVYFLH RQALETLLGR QLEESEREVR SVADVLPHEE HYAPDDPFTS LIGYDRSLRD
AVEKGRAAVL YPHGLHVLLT GPSGVGKTFF AELMHRFACE QASGAIPPLV YFNCAEYAHN
PELLSSHLFG HRQGAFTGAN EHKTGLVEQA DGGYLLLDEV HRLSYEGQEK LFSILDKGEY
RPLGVSSQPR SISVRLICAT TEPVGSALLR TFQRRIQVCI DLPGIRQRSV EEQIELIVGF
LQRESRKIER TVSIDKPLLL WLLNKPLEGN IGQLKSDIQF LCAQAWASGM TEHNDTLQLD
KRLAEMSINP TPEQRLLVDT LFEGKARLNI DARTLPALKT SLATGAEIEE SDLFYSFLTR
EYVNLRNSNV PPAETLAILK NKLSSIFEYG LYSRDSVAHP PRYGDQIEER VTLLIGCVEQ
VLGFSLPENL VNPLRKHFLA LIGYVQRGLI PQLYSSSLIL DRCKDEYDNA TLLCRKINEL
LHIQCPATEV VWLCLFLKEC RHYRQRIDAS PDCGVILIAH GATTATSQAQ YVNRVLEREL
FSAIDMPFEQ SVHDTLETLT QMIQTRQYRR LILLVDIGSL IHFGSTISKL FQIDVLLMPN
ITLTSLLEVG LDLSYETSDL PQLTALLQSK NIPCQLCTPQ QENGGKVLVI SCITGMGTAE
KIKKVLEESF GELMSQDTRM VILDYNEVRS LERVQQALNA SERLAGIVGT FQPGLPDIPF
ISLEELFSEQ GPELVLSLLT PDLSNAERRL EMERSAMRFI SALTMESIIN HISVLNPQRI
LKEMEGVFNH LTSSLSLKPS RQVTLRFLIH CCCMVERIVI NRKPLQMALE SQPNLDARAF
SVIKSAFLPI EDAYAIRLSD AEYFYIYELL YS