| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C3983 |
|---|
| Symbol | xylB |
|---|
| ID | 6488498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | - |
|---|
| Start bp | 3858004 |
|---|
| End bp | 3859458 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642744084 |
|---|
| Product | xylulokinase |
|---|
| Protein accession | YP_002047689 |
|---|
| Protein GI | 194447979 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1070] Sugar (pentulose and hexulose) kinases |
|---|
| TIGRFAM ID | [TIGR01312] D-xylulose kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.308981 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 89 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATATCG GGATCGATCT TGGTACATCG GGTGTAAAAG CTATCCTGTT GAATGAGCAG
GGCGATGTGC TGGCTACGCA TACTGAAAAA CTGACCGTAT CGCGTCCGCA TCCCTTATGG
TCGGAACAGG AACCAGAGCA GTGGTGGCAG GCGACGGATC GTGCGGTTAA AGGTTTAGGT
CGGCAACAGT CGTTAAGTGG CGTCCGGGCG TTGGGCATCG CCGGACAAAT GCATGGCGCG
ACATTGCTTG ATAGCCGTCA GCAGGTTCTG CGACCAGCGA TTTTATGGAA TGACGGACGC
TGTAGCGAAG AGTGCGCCTG GCTGGAAAAA CAGGTGCCGC AGTCGCGTGC GATAACCGGT
AATCTGATGA TGCCCGGTTT TACCGCGCCC AAATTAGTCT GGGTGCAGCG CCACGAACCG
GATATTTTCT ACCAGATAGA CAAGGTTCTG CTGCCGAAAG ATTTTCTGCG GCTGCGAATG
ACAGGCGTCT TTGCCAGCGA TATGTCGGAT GCGGCGGGAA CGATGTGGCT GGACGTGAAA
AAGCGCGACT GGAGCGACGT TATGCTCAAC GCCTGTCATT TAACCCGACA GCAGATGCCA
GCGTTATTTG AAGGTAGTGA CATTACCGGA ACGTTGCTGC CGGAGGTGGC CAGCGCATGG
GGAATGCCAG CAGTACCTGT GGTGGCGGGC GGCGGCGACA ATGCGGCTGG CGCGGTCGGC
GTAGGAATGA TCGATGCCGG ACAGGCGATG CTCTCACTCG GAACATCGGG CGTCTATTTT
GCCGTCAGCG ACGGCTTTCT GAGTAAACCG GAGAGCGCAG TACACAGTTT TTGCCATGCG
CTGCCGGAAC GCTGGCATTT AATGTCTGTG ATGTTGAGCG CCGCCTCTTG TCTGGACTGG
GCGGCTAAAC TCACCGGGCA GGAGAACGTC CCGGCGCTGA TTGCCGCCGC ACAGCAGGCG
GATGAGCATG CCGATTCGAT CTGGTTTTTG CCGTACCTGT CCGGCGAGCG CACGCCGCAT
AATAATCCGC AGGCAAAAGG CGTTTTCTTT GGTTTAACCC ATCAGCATGG CCCGGCGGAA
CTGGCGCGGG CGGTACTGGA GGGCGTGGGA TATGCTTTGG CGGACGGTAT GGATGTGGTT
CACGCCTGCG GCGTCAAACC CGCCAGCGTG ACGCTTATCG GCGGCGGGGC GCGCAGCGAA
TACTGGCGTC AGATGCTATC TGATATTAGC GGGCTACAGC TTGATTATCG TACTGGCGGC
GATGTAGGGC CAGCGCTGGG CGCGGCGCGT CTGGCGCAAA TTGCGGTGAA TAAACAGACC
CCGCTCGCCG ATGTATTGCC GCAGTTGCCG CTGGAGCAGG CGCATTATCC TGATGCGCAG
CGTCATGCGG TTTATCAACA ACGTCGTGAA ACCTTCCGTC GACTTTATCA GCAGCTGTTG
CCGTTGATGT CATAA
|
|---|
| Protein sequence | MYIGIDLGTS GVKAILLNEQ GDVLATHTEK LTVSRPHPLW SEQEPEQWWQ ATDRAVKGLG
RQQSLSGVRA LGIAGQMHGA TLLDSRQQVL RPAILWNDGR CSEECAWLEK QVPQSRAITG
NLMMPGFTAP KLVWVQRHEP DIFYQIDKVL LPKDFLRLRM TGVFASDMSD AAGTMWLDVK
KRDWSDVMLN ACHLTRQQMP ALFEGSDITG TLLPEVASAW GMPAVPVVAG GGDNAAGAVG
VGMIDAGQAM LSLGTSGVYF AVSDGFLSKP ESAVHSFCHA LPERWHLMSV MLSAASCLDW
AAKLTGQENV PALIAAAQQA DEHADSIWFL PYLSGERTPH NNPQAKGVFF GLTHQHGPAE
LARAVLEGVG YALADGMDVV HACGVKPASV TLIGGGARSE YWRQMLSDIS GLQLDYRTGG
DVGPALGAAR LAQIAVNKQT PLADVLPQLP LEQAHYPDAQ RHAVYQQRRE TFRRLYQQLL
PLMS
|
|---|
| |