Gene SeHA_C3686 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C3686 
Symbol 
ID6490401 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand
Start bp3572349 
End bp3574448 
Gene Length2100 bp 
Protein Length699 aa 
Translation table11 
GC content54% 
IMG OID642743804 
Productggdef domain/eal domain-containing protein 
Protein accessionYP_002047416 
Protein GI194447535 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value0.0580402 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGTTA GTGAGTACAA CCACATCCTT GTGGCGGTTT CATTTGCTGT CGCTATTTTT 
GCGTCCTATA CCGCATTAAA TATGGCCGGA CGCGTAGCCG GAAGCGCCCG ATCAAACGCC
AGAATATGGC TAATGGGCGG CGGCTTCGCG CTGGGCGTCG GTATTTGGGC GATGCATTTT
GTCGGGATGC TGGCGATGGA TCACGCGATG AACATGCGCT TCGATCCGTT CCTCACCGGC
CTCTCCATGC TGATCGCGAT CGGCTCCTCC CTGTTTGCGC TATGGCTGGT TAGCGCTGAA
AAACTGCGCC TGCGCCGTTT ACTGCCGGGC GCGCTGGTGA TGGGGCTGGG CATCAGCGCA
ATGCATTATA CCGGGATGGC GGCGCTGCAA TTTGCTTCCA TTATCGTCTG GAATAGCGCG
TGGGTTGGCC TCTCTATCAT TATCGCGCTA CTGGCGTCCT GCGGCGCGCT GTGGCTCACG
TTCCGCCTGC GTCATGAGGG AACAGATGTC GCCCTGAGGC GAGCAGGCGC CGCGGTATTA
ATGGGGATAG CTATCGCCGG CATGCATTAC GCCGGCATGA AGGCCGCACA CTTTCCCCAA
AACTGGCCGA TGGAGCATCG TGGCGTCGAT AGCAACTGGC TGGCTGTTCT TGTCAGCGTG
GTCGCGCTGA CTATCCTGGG TATTACTCTG CTGGTTTCTT TATTTGACGC CCGGCTTCAG
GCCCGTACCG CACTACTTGC CTCTTCGCTG GCGCAGGCGA ACCAGGAACT GGCGCAGTTG
GCGCTGCATG ATACGCTCAC CCGTTTACCA AACCGGGTAC TCCTTGAGGA TCGTCTGGAA
CAGGCCATCA GCAAAGCGAA TCGGGAAAAC ACGTCTTTCG CGCTACTGTT TATGGATCTG
GATGGCTTTA AAACCGTTAA TGACGCTTAT GGTCATGATA TCGGCGATAA GCTACTGGTG
GCGGTCACGC ATCGTCTGAA CCAACCGCTG AGCGGGCAGT TTACCCTGGC GCGGATTGGC
GGCGACGAAT TTGTGCTGCT TGCAGAAGTC AGCGCGCCTG ACGAAGCGGC TTCCCTTGCC
AGCGCGCTGG TACATTCGAT AGATGCGCCC TTTACGATAG ATCCGTACGA ACTGGTCGTC
ACACTTAGCG TGGGAATAGC GCTCTATCCG CTGGACGGAA AAAACGAACG GGAACTGATG
TTCAACGCCG ATGCCGCAAT GTACCACACG AAACATACGG GGCGTAACGG ATACCATTTC
TTTCAGCCAT CAATGAATAT GCTGGCGCAA ACCCAGCTTC AGCTAATGAA TGATCTGTGG
CTGGCGCTGG AAAGACAAGA GCTCAGGCTG GTGTATCAGC CTAAATTTCA GGCTCCTGCC
GGCCCCATTG TAGGATTTGA GGCCCTGTTG CGCTGGTATC ATCCAAAACA AGGCGTACTG
AATCCTGACC AGTTTTTACC GCTGGCGGAA AAAACGGGTC TTATCGTCAC TATCGGTAGC
TGGGTGATAG ACGAGGCGTG TCGACAGCTC CGCGAGTGGC ACTTACAGGG ATACGCCTTA
TGGTCAGTGG CGGTAAACCT GTCCGCCTTA CAATTTGAGC AGCCCGGGCT TGTGGACACC
ATTACGCGGA GCCTGGCCCG ACACAGTATC CGTCCCGATT TATTGATTCT GGAAATCACC
GAAACCACGG CGATGAACAA GCCAGAGCAA AGCGTCGCTA TACTCACCAG ATTAACGGAA
ATGGGGGTTA AGGCCTCTAT TGACGACTTT GGCACCGGTT ATTCCAGCCT TCTCTATCTG
AAACGTCTTC CGGCGTGCGA ACTAAAAATT GATCGCGCTT TCGTACATGA ACTCAGCGAG
GCAGGCGACG GCGCGACCAT TGTTGCGGCT ATTGTCGCGC TGGCGAAAGC GTTAAATCTG
CAAATTGTGG CAGAAGGGGT AGAAAATGAA ACGCAGCAAC AATTTTTGAC CCAGTTAGGA
TGCCATACGC TTCAGGGGTT CCTGCTTGGC AAGCCGCGTA CGGCAGAGGA AATTGCTCGC
GATATTCGGG ACCCTGCCAA TATATTCACA AGGTCAATAT ATAATATCAA CTCAAAATAA
 
Protein sequence
MPVSEYNHIL VAVSFAVAIF ASYTALNMAG RVAGSARSNA RIWLMGGGFA LGVGIWAMHF 
VGMLAMDHAM NMRFDPFLTG LSMLIAIGSS LFALWLVSAE KLRLRRLLPG ALVMGLGISA
MHYTGMAALQ FASIIVWNSA WVGLSIIIAL LASCGALWLT FRLRHEGTDV ALRRAGAAVL
MGIAIAGMHY AGMKAAHFPQ NWPMEHRGVD SNWLAVLVSV VALTILGITL LVSLFDARLQ
ARTALLASSL AQANQELAQL ALHDTLTRLP NRVLLEDRLE QAISKANREN TSFALLFMDL
DGFKTVNDAY GHDIGDKLLV AVTHRLNQPL SGQFTLARIG GDEFVLLAEV SAPDEAASLA
SALVHSIDAP FTIDPYELVV TLSVGIALYP LDGKNERELM FNADAAMYHT KHTGRNGYHF
FQPSMNMLAQ TQLQLMNDLW LALERQELRL VYQPKFQAPA GPIVGFEALL RWYHPKQGVL
NPDQFLPLAE KTGLIVTIGS WVIDEACRQL REWHLQGYAL WSVAVNLSAL QFEQPGLVDT
ITRSLARHSI RPDLLILEIT ETTAMNKPEQ SVAILTRLTE MGVKASIDDF GTGYSSLLYL
KRLPACELKI DRAFVHELSE AGDGATIVAA IVALAKALNL QIVAEGVENE TQQQFLTQLG
CHTLQGFLLG KPRTAEEIAR DIRDPANIFT RSIYNINSK