| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C3647 |
|---|
| Symbol | degS |
|---|
| ID | 6489349 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | + |
|---|
| Start bp | 3531290 |
|---|
| End bp | 3532360 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642743765 |
|---|
| Product | serine endoprotease |
|---|
| Protein accession | YP_002047377 |
|---|
| Protein GI | 194447948 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 87 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGTGA AGCTCTTACG TTCGGTCGCA ATAGGTTTAA TTGTCGGCGC TATTCTGTTG
GCCGTCATGC CTTCTTTGCG CAAAATTAAT CCTATCGCCG TCCCGCAATT CGACAGTACC
GATGAGACGC CAGCCAGTTA TAATTTTGCG GTTCGCCGCG CCGCGCCTGC CGTCGTCAAC
GTCTATAACC GCAGTATGAA CAGTACCGCG CATAATCAAC TGGAGATCCG CACGCTGGGT
TCCGGCGTGA TCATGGATCA ACGCGGTTAT ATTATTACCA ACAAGCACGT GATTAACGAT
GCCGATCAGA TTATCGTCGC GCTACAGGAT GGCCGCGTCT TTGAAGCGCT ACTGGTTGGC
TCCGATTCGC TTACCGATCT GGCGGTGCTG AAGATCAACG CCACTGGCGG GCTGCCTACC
ATCCCGATTA ATACAAAGCG TACACCGCAT ATTGGCGACG TCGTACTGGC TATCGGCAAC
CCATATAATC TGGGACAGAC CATTACCCAG GGGATCATCA GCGCAACGGG TCGTATCGGC
CTGAACCCGA CGGGGCGACA GAATTTTCTC CAGACCGACG CCTCGATTAA CCACGGTAAT
TCCGGCGGCG CGCTGGTCAA CTCGTTAGGC GAACTGATGG GGATCAACAC CCTCTCTTTT
GATAAGAGTA ACGATGGTGA AACGCCGGAA GGCCTTGGTT TTGCGATTCC CTTCCAGCTA
GCCACGAAAA TTATGGATAA GCTTATCCGC GACGGTCGTG TGATTCGCGG CTATATCGGT
ATTGGCGGAC GAGAAATCGC GCCGCTGCAC GCGCAGCAGG GTAGCGGCAT GGACCCGATT
CAGGGCATTG TCGTTAATGA AGTGACGCCA AACGGCCCCG CCGCGCTTGC CGGTATTCAG
GTTAATGATT TGATTATTTC GGTCAATAAT AAACCCGCCG TGTCCGCGCT GGAGACAATG
GATCAGGTGG CGGAAATCCG CCCGGGCTCC GTCATTCCGG TCGTGGTAAT GCGGGATGAT
AAGCAACTCA CGTTCCAGGT GACGGTGCAG GAATACCCGG CGTCGAACTA A
|
|---|
| Protein sequence | MFVKLLRSVA IGLIVGAILL AVMPSLRKIN PIAVPQFDST DETPASYNFA VRRAAPAVVN
VYNRSMNSTA HNQLEIRTLG SGVIMDQRGY IITNKHVIND ADQIIVALQD GRVFEALLVG
SDSLTDLAVL KINATGGLPT IPINTKRTPH IGDVVLAIGN PYNLGQTITQ GIISATGRIG
LNPTGRQNFL QTDASINHGN SGGALVNSLG ELMGINTLSF DKSNDGETPE GLGFAIPFQL
ATKIMDKLIR DGRVIRGYIG IGGREIAPLH AQQGSGMDPI QGIVVNEVTP NGPAALAGIQ
VNDLIISVNN KPAVSALETM DQVAEIRPGS VIPVVVMRDD KQLTFQVTVQ EYPASN
|
|---|
| |