Gene SeHA_C3540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C3540 
Symbol 
ID6491769 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand- 
Start bp3434832 
End bp3435770 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content45% 
IMG OID642743668 
ProductDNA-binding transcriptional activator TdcA 
Protein accessionYP_002047282 
Protein GI194447972 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.0279339 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones88 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATACTC TTGTTCTCCC TAAAACACAG CATTTGGTGG TCTTTCAGGA AGTCATTAGA 
AGTGGTTCTA TCGGTTCTGC CGCAAAATCG TTAGGGTTAA CCCAACCCGC CGTCAGTAAA 
ATCATTAGCG ATGTTGAGGC CTATTTTGGC GTTGAGCTAA TTGTACGCAA AAATACCGGC 
GTTACGTTGA CCGAAGCGGG ACAGGTACTG CTTTCCTGGT CTGAATCTAT CACCCGCGAA 
ATGAAAAACA TGATCAACGA GATGAACAGT ATGACGTGCA ATACCGTTGT CGACGTCTCG 
TTTGGTTTTC CTTCGCTGAT TGGCTTTACC TTCATGTCCG ATATGATTCA TAAGTTCAAA 
GAGGTATTTC CAAAAGCGCA GGTATCCATG TACGAAGCCC AGCTCTCTTC ATTCCTGCCG 
GCCCTGCGCG ACGGGCGGCT GGACTTTGCT ATCGGTACGC TCAGTAATGA AATGCAGCTA 
CAGGATCTGC ATGTCGAGCC GCTGTTTGAA TCAGAGTTTG TCCTGGTAGC CAGCAAGTCC 
CGAACGTGCA CCGGCACCAT CACACTGGAA TCGTTAAAGG ACGAACAGTG GGTGTTGCCG 
CAAACGAATA TGGGCTACTA CAGCGAATTA CTCACCACTC TACAACGAAA TGGCATCAGC 
ATCGAAAACA TTGTTAAAAC AGATTCCGTT GTCACAATAT ATAATCTTGT TCTCAATGCT 
GATTTCTTAA CTGTTATTCC CTGCGATATG ACCACGCCTT TTGGCTCTAA TCAATTTATC 
ACGATACCCA TAAAAGACAC GTTACCCGTC GCACGTTATG CGGCGGTATG GTCTAAAAAT 
TATCGTATCA AAAAAGCCGC TTCGGTATTA GTAGAATTGG CTAAACAATA TTCATCATAT 
AATGGATGCA GACGCAGGCA GTTAATAGAA ATTGAATGA
 
Protein sequence
MNTLVLPKTQ HLVVFQEVIR SGSIGSAAKS LGLTQPAVSK IISDVEAYFG VELIVRKNTG 
VTLTEAGQVL LSWSESITRE MKNMINEMNS MTCNTVVDVS FGFPSLIGFT FMSDMIHKFK 
EVFPKAQVSM YEAQLSSFLP ALRDGRLDFA IGTLSNEMQL QDLHVEPLFE SEFVLVASKS 
RTCTGTITLE SLKDEQWVLP QTNMGYYSEL LTTLQRNGIS IENIVKTDSV VTIYNLVLNA 
DFLTVIPCDM TTPFGSNQFI TIPIKDTLPV ARYAAVWSKN YRIKKAASVL VELAKQYSSY 
NGCRRRQLIE IE