Gene SeHA_C3281 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C3281 
Symbol 
ID6491960 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand
Start bp3199203 
End bp3199862 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content51% 
IMG OID642743418 
Producthemolysin-3 
Protein accessionYP_002047034 
Protein GI194449926 
COG category[R] General function prediction only 
COG ID[COG1272] Predicted membrane protein, hemolysin III homolog 
TIGRFAM ID[TIGR01065] channel protein, hemolysin III family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones95 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGCAAA AACCATTAAT GACGCAGGGG TATTCGCTGG CTGAGGAAAT CGCCAACAGT 
ATTAGCCACG GCATTGGATT GGTATTTGGT ATTGTCGGCC TGGTGCTGTT GTTGGTTCAG
GCGGTAGAGG CGAATGCGGG TATGACGGCT ATCGCCAGCT ACAGTTTATA TGGCGGGAGC
ATGATCCTGC TTTTTCTTGC CTCAACGCTT TATCATGCCA TTCCTCATCA GCGGGCAAAA
ATCTGGTTAA AGAAATTTGA TCACTGCGCT ATCTATCTGC TCATTGCCGG AACCTATACG
CCATTTCTGC TGGTAGGTCT GGATTCGCCG CTGGCGCGCG GACTAATGAT TGTGATCTGG
AGCCTGGCGC TATTCGGTAT CCTCTTCAAG TTGACGATTG CGCACCGATT TAAAGTGCTT
TCACTGGTTA CGTATCTGGC AATGGGCTGG CTGTCGCTGA TAGTGGTTTA TCAGTTGGCG
ATTAAGCTGG CGATAGGCGG CGTGACGCTG CTGGCGGTAG GTGGCGTCGT TTACTCGCTG
GGCGTAATTT TCTATGTTTG CAAACGCATA CCTTATAACC ACGCCATCTG GCATGGCTTT
GTGCTGGGCG GCAGCGTGTG CCACTTCCTG GCTATCTATT TGTATGTGGG AGAGGCGTAA
 
Protein sequence
MVQKPLMTQG YSLAEEIANS ISHGIGLVFG IVGLVLLLVQ AVEANAGMTA IASYSLYGGS 
MILLFLASTL YHAIPHQRAK IWLKKFDHCA IYLLIAGTYT PFLLVGLDSP LARGLMIVIW
SLALFGILFK LTIAHRFKVL SLVTYLAMGW LSLIVVYQLA IKLAIGGVTL LAVGGVVYSL
GVIFYVCKRI PYNHAIWHGF VLGGSVCHFL AIYLYVGEA