| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C3229 |
|---|
| Symbol | lysA |
|---|
| ID | 6492122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | - |
|---|
| Start bp | 3155333 |
|---|
| End bp | 3156595 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642743367 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_002046984 |
|---|
| Protein GI | 194450314 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.000136805 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTGC CGCATTATTA CGCTGAAACC GACCTTAACG CTGAAAATTT GCTCAGATTA
CCTGCTGAAT TCGGCTGTCC GGTCTGGGTC TATGACGCGC ACATTATTCG CCGTCAGATA
GCCGCCCTGC AGCAGTTTGA CGTTGTGCGT TTTGCGCAAA AAGCCTGTTC GAACATTCAT
ATCCTGCGCT TAATGCGCGC GCAGGGTGTC AAGGTGGATT CTGTTTCATT GGGGGAGATC
GAACGTGCGC TGGCGGCGGG CTACGATCCG CAAACGTGCC CTGATGATAT CGTTTTTACC
GCCGATGTGA TTGACGCCGC CACGCTGGCG CGCGTCAGCG AACTGCATAT TCCGGTCAAT
GCCGGTTCGG TAGATATGCT GACGCAGCTT GGCCAGGTTT CGCCTGGGCA TCGCGTCTGG
TTGCGCGTGA ATCCTGGCTT TGGTCACGGC CACAGCCAGA AAACCAACAC CGGGGGCGAA
AACAGCAAAC ACGGCATCTG GCATAGCGAT CTTCCGGCGG CGCTGGCGGT AATGCAGAAA
TACCGACTGA AACTTGTCGG TATCCATATG CACATTGGTT CCGGCGTCGA TTATGGTCAT
CTGGAGCAGG TTTGCGGCGC GATGGTTCGC CAGGTGCTGG AATGTGGTCA GGATGTGGAG
GCGATTTCGG CAGGCGGCGG ACTCTCGATA CCTTATCGTG AGGGAGAAGA GCCCGTTGAT
ACGCGCCATT ACTATGGTCT GTGGAACGCG GCGCGCGAGC AAATAGCCCG CCATCTGGGA
CATGCGGTCA AACTTGAGAT CGAACCCGGA CGTTATCTGG TGGCGCAATC GGGCGTGCTG
GTAACGCAGG TGCGTAGCGT AAAACAGATG GGAAGCCGCC ATTTCGTGCT GGTCGACGCT
GGTTTTAACG ATCTGATGCG CCCGGCGATG TACGGTAGCT ATCACCGTAT TTCGGCGCTG
GCGGCGGATG GTCGCGCGCT TGAAAATGGC CCGTGGGTCG AGACGGTGGT CGCCGGGCCG
CTATGCGAAT CAGGCGATGT TTTTACGCAG CAGGAAGGGG GAATGGTTGA AACACGCGCC
TTACCTGCGG TCATCCCCGG CGATTACCTC GTATTGCACG ATACCGGCGC GTACGGCGCG
TCTATGTCAT CGAATTACAA CAGCCGCCCG CTCCTGCCGG AAGTACTGTT TGACAATGGA
CAGGCGCGGC TGATCCGCCG TCGTCAGACC ATTGAAGAGC TGTTAGCGCT GGAGATGCTC
TGA
|
|---|
| Protein sequence | MSLPHYYAET DLNAENLLRL PAEFGCPVWV YDAHIIRRQI AALQQFDVVR FAQKACSNIH
ILRLMRAQGV KVDSVSLGEI ERALAAGYDP QTCPDDIVFT ADVIDAATLA RVSELHIPVN
AGSVDMLTQL GQVSPGHRVW LRVNPGFGHG HSQKTNTGGE NSKHGIWHSD LPAALAVMQK
YRLKLVGIHM HIGSGVDYGH LEQVCGAMVR QVLECGQDVE AISAGGGLSI PYREGEEPVD
TRHYYGLWNA AREQIARHLG HAVKLEIEPG RYLVAQSGVL VTQVRSVKQM GSRHFVLVDA
GFNDLMRPAM YGSYHRISAL AADGRALENG PWVETVVAGP LCESGDVFTQ QEGGMVETRA
LPAVIPGDYL VLHDTGAYGA SMSSNYNSRP LLPEVLFDNG QARLIRRRQT IEELLALEML
|
|---|
| |