| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C3176 |
|---|
| Symbol | |
|---|
| ID | 6489568 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | + |
|---|
| Start bp | 3101481 |
|---|
| End bp | 3102845 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642743319 |
|---|
| Product | lysine decarboxylase family protein |
|---|
| Protein accession | YP_002046938 |
|---|
| Protein GI | 194450260 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1611] Predicted Rossmann fold nucleotide-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.133947 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 0.691033 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATTACAC ATATTAGCCC GCTTGGCTCA ATGGATATGT TGTCGCAACT GGAAGTGGAC
ATGCTGAAAC GCACGGCCAG TAGCGACCTG TATCAACTGT TTCGTAACTG TTCACTTGCC
GTTCTTAACT CCGGCAGCCT GACCGACAAC AGCAAAGAGC TGCTGTCCCG CTTTGAAAAT
TTCGATATTA ACGTACTGCG CCGCGAGCGC GGCGTGAAGC TGGAATTGAT TAACCCGCCT
GAAGACGCTT TTGTTGACGG GCGGATTATT CGTGCGCTAC AGGCTAACCT GTTCGCGGTG
CTGCGCGACA TTCTCTTTGT GAATGGGCAG ATCCACAATG CCGGCCGTTT CCAGCATCTG
GATCTTGAAA GCTCAACACA TATCACCAAT CTGGTGTTCT CCATTTTGCG CAACGCCCGG
GCGCTGCACG TCGGCGAAGC GCCAAACATG GTGGTATGCT GGGGCGGCCA CTCAATTAAC
GAAAACGAGT ACCTGTATGC CCGTCGCGTC GGCACGCAGT TGGGATTACG CGAGCTGAAC
ATCTGCACCG GCTGCGGCCC TGGGGCGATG GAAGCCCCCA TGAAGGGCGC GGCGGTCGGT
CACGCACAGC AGCGCTATAA AGACAGCCGC TTTATCGGCA TGACTGAACC TTCCATTATT
GCGGCTGAAC CGCCTAACCC GCTGGTGAAC GAACTGATCA TCATGCCGGA TATCGAAAAA
CGCCTGGAAG CGTTCGTCCG TATCGCACAC GGTATCATCA TCTTCCCGGG CGGCGTGGGT
ACGGCGGAAG AGCTGCTTTA TTTGCTGGGG ATTCTGATGA ATCCAGCCAA TAAAAATCAG
GTGCTGCCGC TGATCCTGAC CGGACCAAAA GAGAGCGCCG ATTACTTCCG CGTGCTGGAT
GAGTTTATTA CCCATACGCT GGGCGAAGCG GCCCGCCGTC ATTACCGCAT CATCATTGAC
GATGCGGCGG AGGTAGCGCG GCTGATGAAG AAAGCGATGC CGCAAGTGAA AGAGAATCGC
CGCGATACTG GCGACGCCTA TAGTTTTAAC TGGTCGATGC GTATTGCACC GGATCTGCAG
GTGCCGTTTG AGCCGTCGCA TGAGAATATG GCCAACCTGA AACTGTACCC GGATCAGCCG
GTTGAGATTC TGGCGGCGGA TCTGCGGCGC GCCTTCTCCG GTATTGTCGC GGGGAACGTG
AAGGAGGTCG GGATACGCGC CATTGAAGCT AATGGTCCGT ATAAAATCCA CGGCGATCGA
GAGATGATGC GTCGCATGGA CGATCTGCTG CAGGGATTCG TCGCGCAGCA TCGTATGAAA
TTGCCGGGTT CCGCCTACAT CCCCTGTTAC GAGATCTGCG CTTAA
|
|---|
| Protein sequence | MITHISPLGS MDMLSQLEVD MLKRTASSDL YQLFRNCSLA VLNSGSLTDN SKELLSRFEN
FDINVLRRER GVKLELINPP EDAFVDGRII RALQANLFAV LRDILFVNGQ IHNAGRFQHL
DLESSTHITN LVFSILRNAR ALHVGEAPNM VVCWGGHSIN ENEYLYARRV GTQLGLRELN
ICTGCGPGAM EAPMKGAAVG HAQQRYKDSR FIGMTEPSII AAEPPNPLVN ELIIMPDIEK
RLEAFVRIAH GIIIFPGGVG TAEELLYLLG ILMNPANKNQ VLPLILTGPK ESADYFRVLD
EFITHTLGEA ARRHYRIIID DAAEVARLMK KAMPQVKENR RDTGDAYSFN WSMRIAPDLQ
VPFEPSHENM ANLKLYPDQP VEILAADLRR AFSGIVAGNV KEVGIRAIEA NGPYKIHGDR
EMMRRMDDLL QGFVAQHRMK LPGSAYIPCY EICA
|
|---|
| |