| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C3163 |
|---|
| Symbol | rumA |
|---|
| ID | 6487753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | - |
|---|
| Start bp | 3087805 |
|---|
| End bp | 3089100 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642743307 |
|---|
| Product | 23S rRNA 5-methyluridine methyltransferase |
|---|
| Protein accession | YP_002046926 |
|---|
| Protein GI | 194447436 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0558904 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 0.0471726 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAAT TCTACTCTGC AAAACGGCGC GTGACGACGC GTCAGATCAT AACCGTTAAA
GTCAATGACC TCGATTCATT TGGTCAGGGC GTAGCCCGTC ATAACGGAAA GGCGCTGTTT
ATCCCCGGTT TATTGCCTGA GGAAAGCGCA GAAGTCATTA TTACAGAAGA TAAAAAGCAA
TTTGCCCGCG CACGCGTTTC GCGCCGTTTG AATGATAGCC CGGAACGAGA AACGCCGCGC
TGCCCGCATT TTGGCGTCTG CGGCGGTTGT CAGCAACAGC ATGTCAGCAT CGCCCTGCAA
CAACGCAGCA AAAGCGCGGC GCTGGCGCGT TTGATGAAAC ACGAGGTGAA TGACATCATC
GCCGGCGCGC CCTGGGGTTA TCGGCGTCGT GCGCGGTTAA GTCTGAATTG TCCGCCGGAT
AAACCGCTGC AAATGGGATT TCGCAAAGCG GGTTCCAGCG ATATCGTCAA TGTCGAACAG
TGCCCCGTTT TGGCGCCCCA GCTTGAAGCA TTGCTGCCCC GAATCAGGGC GTGTCTGGCG
AGTTTACACG GCACCCGACA TCTTGGGCAT GTTGAGCTGG TACAGGCGGG AAGCGGTACG
CTGATGATTC TGCGCCATAC CGCGCCATTA AGTGCGGCGG ATAAAGAAAA ACTGGAACGC
TTTTCGCATT CTGAGGGATT GTCTCTGTTT CTGGCGCCGT TTAGCGAGAT ACTGGAAACG
GTATCTGGCG AGGCGCCCTG GTATGATTCG CACGGCTTAC GTTTAGCCTT CAGTCCGCGA
GACTTTATTC AGGTTAATGA GGCGGTAAAC CAGCAAATGG TCGCCCGCGC GCTGGAGTGG
CTTGATGTGC GCGCCGAGGA TCGTGTCCTG GATCTGTTCT GCGGAATGGG GAATTTTACG
CTGCCGCTGG CAACGCGCGC GGCAAGCGTG ATTGGGGTTG AGGGCGTTCC GGCGCTGGTA
GAAAAAGGCC GTGAAAACGC CATCCGCAAT GGTTTACATA ATGTGACATT CTTCCATGAG
AACCTGGAGG AAGATGTCAC GAAGCAGCCG TGGGCGAAAA ACGGCTTTGA CAAAGTCTTA
CTCGATCCTG CGCGTGCGGG GGCTACAGGA GTGATGCGAC ATATTATAAA ATTAAAACCT
ATTCGCATTG TTTATGTATC CTGTAACCCG GCGACGCTGG CGCGCGATAG TGAAGCGCTG
GTCAATGCGG GATATGAGGT TACGCGTTTA GCGATGCTCG ACATGTTCCC GCACACAGGA
CATCTGGAAT CAATGGTTCT GTTCGAGCGC ATGTAA
|
|---|
| Protein sequence | MAQFYSAKRR VTTRQIITVK VNDLDSFGQG VARHNGKALF IPGLLPEESA EVIITEDKKQ
FARARVSRRL NDSPERETPR CPHFGVCGGC QQQHVSIALQ QRSKSAALAR LMKHEVNDII
AGAPWGYRRR ARLSLNCPPD KPLQMGFRKA GSSDIVNVEQ CPVLAPQLEA LLPRIRACLA
SLHGTRHLGH VELVQAGSGT LMILRHTAPL SAADKEKLER FSHSEGLSLF LAPFSEILET
VSGEAPWYDS HGLRLAFSPR DFIQVNEAVN QQMVARALEW LDVRAEDRVL DLFCGMGNFT
LPLATRAASV IGVEGVPALV EKGRENAIRN GLHNVTFFHE NLEEDVTKQP WAKNGFDKVL
LDPARAGATG VMRHIIKLKP IRIVYVSCNP ATLARDSEAL VNAGYEVTRL AMLDMFPHTG
HLESMVLFER M
|
|---|
| |