| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C3088 |
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| Symbol | |
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| ID | 6490825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011083 |
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| Strand | - |
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| Start bp | 3016111 |
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| End bp | 3017781 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642743239 |
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| Product | type III secretion outer membrane pore, YscC/HrcC family |
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| Protein accession | YP_002046858 |
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| Protein GI | 194448425 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 73 |
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| Fosmid unclonability p-value | 0.994223 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCCAGAG TGCTGGCATG TGCCGCGCTT GTTCTGGTTG CACCTGGTTA TTCTAGTGAA
AAAATACCTG TAACGGGAAG TGGGTTTGTT GCGAAAGACG ATAGCCTGCG GACATTTTTC
GATGCCATGG CGCTACAGCT AAAGGAGCCT GTCATTGTTA GCAAAATGGC GGCACGAAAA
AAAATTACGG GCAACTTTGA GTTTCACGAT CCTAACGCAT TACTGGAGAA GCTTTCCCTA
CAACTGGGGC TGATTTGGTA TTTCGATGGG CAGGCTATCT ATATTTATGA CGCCAGTGAA
ATGCGCAATG CCGTGGTTTC TTTACGCAAC GTCTCACTCA ATGAGTTCAA CAATTTTCTA
AAACGCTCAG GTTTATATAA CAAAAATTAC CCGCTACGTG GCGATAACCG TAAAGGAACA
TTCTATGTTT CAGGGCCACC CGTCTATGTT GATATGGTGG TCAACGCCGC CACCATGATG
GACAAGCAAA ACGATGGTAT TGAGCTGGGA CGCCAGAAAA TAGGGGTGAT GCGTCTGAAC
AATACCTTCG TGGGCGATCG TACCTACAAT CTGCGCGATC AGAAAATGGT TATCCCCGGT
ATTGCTACGG CGATTGAAAG GTTATTGCAG GGAGAAGAGC AACCCTTAGG TAATATTGTC
AGTAGCGAAC CTCCGGCGAT GCCAGCGTTT TCAGCGAATG GAGAAAAAGG TAAAGCAGCA
AATTATGCCG GTGGCATGAG TCTGCAGGAA GCTTTAAAGC AAAACGCCGC GGCGGGCAAT
ATTAAAATCG TGGCCTATCC GGATACCAAC AGTTTGTTAG TAAAAGGAAC GGCTGAGCAG
GTGCATTTTA TCGAAATGCT GGTTAAAGCG CTGGATGTCG CCAAACGTCA CGTAGAATTA
TCCCTGTGGA TTGTCGATCT TAATAAAAGC GATCTGGAGC GTTTGGGCAC TTCATGGAGC
GGCAGCATTA CTATTGGGGA CAAACTTGGC GTGTCATTAA ACCAGGCTTC AATAAGTACC
CTCGATGGCA GTCGATTCAT CGCCGCGGTA AATGCGTTAG AAGAGAAGAA ACAGGCGACG
GTGGTTTCGC GCCCGGTATT ACTGACTCAG GAAAATGTTC CCGCTATTTT TGATAACAAC
AGAACGTTTT ACACCAAGCT GATTGGGGAA CGTAATGTGG CGCTTGAGCA TGTAACATAC
GGAACAATGA TCCGAGTGCT GCCCCGTTTT TCCGCAGATG GTCAGATAGA AATGTCGCTG
GACATTGAAG ATGGTAACGA TAAGACGCCG CAATCCGATA CTACCACCTC CGTAGATGCG
TTACCCGAAG TCGGACGAAC GTTAATTAGC ACTATTGCGA GAGTTCCGCA CGGAAAAAGT
TTGCTGGTCG GTGGTTATAC ACGGGATGCA AATACCGATA CTGTCCAAAG TATTCCGTTT
TTAGGCAAAT TACCGCTTAT TGGTAGCCTG TTCCGTTATT CCAGTAAGAA TAAAAGTAAT
GTTGTTCGTG TATTCATGAT TGAACCAAAA GAAATTGTCG ACCCGTTAAC GCCGGATGCC
AGCGAATCGG TAAACAATAT TCTGAAACAA AGCGGTGCCT GGAGTGGGGA CGATAAGTTA
CAGAAATGGG TTCGTGTTTA TCTGGATAGA GGTCAGGAGG CAATTAAATG A
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| Protein sequence | MARVLACAAL VLVAPGYSSE KIPVTGSGFV AKDDSLRTFF DAMALQLKEP VIVSKMAARK
KITGNFEFHD PNALLEKLSL QLGLIWYFDG QAIYIYDASE MRNAVVSLRN VSLNEFNNFL
KRSGLYNKNY PLRGDNRKGT FYVSGPPVYV DMVVNAATMM DKQNDGIELG RQKIGVMRLN
NTFVGDRTYN LRDQKMVIPG IATAIERLLQ GEEQPLGNIV SSEPPAMPAF SANGEKGKAA
NYAGGMSLQE ALKQNAAAGN IKIVAYPDTN SLLVKGTAEQ VHFIEMLVKA LDVAKRHVEL
SLWIVDLNKS DLERLGTSWS GSITIGDKLG VSLNQASIST LDGSRFIAAV NALEEKKQAT
VVSRPVLLTQ ENVPAIFDNN RTFYTKLIGE RNVALEHVTY GTMIRVLPRF SADGQIEMSL
DIEDGNDKTP QSDTTTSVDA LPEVGRTLIS TIARVPHGKS LLVGGYTRDA NTDTVQSIPF
LGKLPLIGSL FRYSSKNKSN VVRVFMIEPK EIVDPLTPDA SESVNNILKQ SGAWSGDDKL
QKWVRVYLDR GQEAIK
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