| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C2906 |
|---|
| Symbol | |
|---|
| ID | 6491302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | + |
|---|
| Start bp | 2847318 |
|---|
| End bp | 2848727 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642743070 |
|---|
| Product | type I secretion outer membrane protein, TolC family |
|---|
| Protein accession | YP_002046694 |
|---|
| Protein GI | 194448743 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.140715 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 75 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAGAG TCGCGCCTGT CGCCATCGTA CTGGCATTTG CTTTGTTTCA TCACCAGCCC
CGGGGCGCAG AAGCGCCGCC AATGATTACA TCCGAAGGAT TAGCAACGGA CCAGATGCTT
CCTTCGCTGG ATGGCTCCGC CGCTGAGTTG CCGCTCAGCG CCGCCGCGCC GGGCAACCTG
ACGCTCAATG ACGCGGTCAA TCGCGCCGTT AACTGGCATC CTTCTATTCG CGAAGCCATC
GGCAAACTGC TCGCACAGAA TGAACAAATA GAGGTCGCCA AATCGAAATA TTATCCGCAA
GTCAGCGCTG GCGTGAACAA TGGGTACAGC AATACCTACA CCGATCACGG GTATAGCCCC
TCGCTAGTGC TGTCGGTATC GCAAATGCTT TATGACTTCG GCAAAGTGGC AAGCCAGGTT
CGCGCCGAAA CCGCAGGCGC AGCGCAGCAA CAGGCCAATG TGTTGCTCAG TATTGATACC
GTCGCGCACG AAACCGCCAA CGCCATTGTA CAAACGCAGA GCTGGCAGCA AATGGTAGAA
GCGGCGGAAG AACAGCTCGT CGCGCTGGAC AGCATCGGTA AACTTATCCG GCAGCGCAGC
GATGAAGGCG CTACGTCGCT CTCTGACGTG GTGCAAACCG AAGCCAGAAT CGAATCCGCC
CGCTCGCAAC TGGCGCAGTA TCAGGCCAAT CTCGACAGTG CGAAAGCCTC ACTGATGAGC
TGGCTGGGCT GGAATTCGCT TAACGGCATC AATAATGACT TCCCGGCGAA ACTTGCTCGC
AGCTGTGAGA CGGCGACTCC CGACGATCGA CTGGTGCCCG CGGTACTGGC CGCCTGGGCG
CAGGCCAACG TTGCGCGGGC GAATCTGGAC TATGCCAGCG CGCAAATGAC GCCGACGATT
TCGCTCGAAC CTTCTGTACA ACATTATCTT AATGATAAAT ATCCCAGTCA TGAAGTGCTG
GATAAAACCC AGTATTCCAC CTGGGTAAAA GTTGAGATGC CGCTTTATCA GGGCGGAGGG
CTGACTGCCC GACGCAACGC CGCCAGCCAT GCGGTAGACG CGGCTCAGTC GACCATTCAG
CGCACCCGGC TTGATGTCCG CCAGAAACTG ATGGAGGCGC GCAGCCAGGC AATGAGTCTT
GCCAGCGCGT TACAAATCCT TCGTCGGCAA CAGCAGCTTA GCGAACGTAC GCGCGAACTG
TATCAGCAGC AATACCTTGA CCTCGGTTCC CGCCCGCTGC TCGACGTGCT TAATGCGGAG
CAGGAAGTTT ACCAGGCGCG TTTTGCCGAA CTGCAAACGG AAAGCCAGTT GCATCAGTTG
CAACTGAACT GTCTGTATAA CACCGGCGCG CTTCGTCAGG CGTTCGCGTT AAATCATCGC
AGCATTCAAT CCGTGGAGAT CCAGCCATGA
|
|---|
| Protein sequence | MGRVAPVAIV LAFALFHHQP RGAEAPPMIT SEGLATDQML PSLDGSAAEL PLSAAAPGNL
TLNDAVNRAV NWHPSIREAI GKLLAQNEQI EVAKSKYYPQ VSAGVNNGYS NTYTDHGYSP
SLVLSVSQML YDFGKVASQV RAETAGAAQQ QANVLLSIDT VAHETANAIV QTQSWQQMVE
AAEEQLVALD SIGKLIRQRS DEGATSLSDV VQTEARIESA RSQLAQYQAN LDSAKASLMS
WLGWNSLNGI NNDFPAKLAR SCETATPDDR LVPAVLAAWA QANVARANLD YASAQMTPTI
SLEPSVQHYL NDKYPSHEVL DKTQYSTWVK VEMPLYQGGG LTARRNAASH AVDAAQSTIQ
RTRLDVRQKL MEARSQAMSL ASALQILRRQ QQLSERTREL YQQQYLDLGS RPLLDVLNAE
QEVYQARFAE LQTESQLHQL QLNCLYNTGA LRQAFALNHR SIQSVEIQP
|
|---|
| |