Gene SeHA_C2289 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C2289 
Symbol 
ID6489584 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand
Start bp2189189 
End bp2191537 
Gene Length2349 bp 
Protein Length782 aa 
Translation table11 
GC content48% 
IMG OID642742479 
Productsecreted effector protein 
Protein accessionYP_002046114 
Protein GI194449331 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value0.0339456 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATAT CATCAGGCGC AATTAATTTT TCTACTATTC CTAACCAGGT TAAAAAATTA 
ATTACCTCTA TTCGTGAACA TACGAAAAAC GGGCTCACCT CAAAAATAAC CAGTGTTAAA
AACACGCATA CATCTTTAAA TGAAAAATTT AAAACAGGAA AGGACTCACC GATTGAGTTC
GCGTTACCAC AAAAAATAAA AGACTTCTTT CAGCCGAAAG ATAAAAACAC CTTAAACAAA
ACATTGATTA CTGTTAAAAA TATTAAAGAT ACAAATAATG CAGGCAAGAA AAATATTTCA
GCAGAAGATG TCTCAAAAAT GAATGCAGCA TTCATGCGTA AGCATATTGC AAATCAAACA
TGTGATTATA ATTACAGAAT GACAGGTGCG GCCCCGCTCC CCGGTGGAGT CTCTGTATCA
GCCAATAACA GGCCTACGGT TTCTGAAGGT AGAACACCAC CAGTATCCCC CTCCCTCTCA
CTTCAGGCTA CGTCTTCCCC GTCATCACCT GCCGACTGGG CTAAGAAACT CACGGATGCA
GTTTTACGGC AGAAAGCCGG AGAAACCCTT ACGGCCGCAG ATCGCGATTT TTCAAACGCA
GATTTCCGTA ATATTACATT CAGCAAAATA TTGCCCCCCA GCTTCATGGA GCGAGACGGC
GATATTATTA AGGGGTTCAA CTTTTCAAAT TCAAAATTTA CTTATTCTGA TATATCTCAT
TTACATTTTG ACGAATGCCG ATTCACTTAC TCGACACTGA GTGATGTAGT CTGCAGTAAT
ACAAAATTTA GTAATTCAGA CATGAATGAA GTGTTTCTAC AGTATTCAAT TACTACACAA
CAACAGCCCT CTTTTATTGA TACAACATTA AAAAATACGC TTATACGTCA CAAAGCCAAC
CTCTCTGGCG TTATTTTAAA TGAACCGGAT AATTCATCAC CTCCGTCAGT ATCAAGGGGC
GGAAATTTTA TTCGTCTAGG TGATATCTGG CTGCAAATGC CACTCCTTTG GACTGAGAAC
GCTGCGGATG GATTTTTAAA TCATGAGCAC AATAATGGTA AAAGTATTCT GATGACCATT
GACAGTCTGC CCGATAAATA CAGTCAGGAA AAAGTCCGGG CAATGGAAGA CCTGGTTAAG
TCATTGCGGG ATGGCCGCTT AACAGAGGCA GGTATCCGGC CAGTTGAAAG TTCGCTGGTA
AGCGTACTGG CCCACCCCCC CTATACGCAA AGTGCGCTTA TCAGCGAGTG GCTCGGGCCT
GTTCAGGAAC GTTTTTTTGC CCACCAGTGC CAGACCTATA ATGACGTTCC CCTGCCGGCT
CCTGACACAT ATTATCAGCA GCGCCTACTG CCTGTGTTGC TGGATTCGTT TGACAGGAAC
AGCGCCGCCA TGACCACTCA CAGCGGACTC TTTAATCAGG TGATTTTACA CTGTATGACA
GGCGTGGACT GCACTGATGG CATCCGCCAG AAAGCTGCAG CGCTTTATGA ACAGTATCTT
GCTCACCCGG CGGTGTCTCC CCACATCCAT AATGGGCTCT TCGGCAATTA TGACGGCAGC
CCGGACTGGA CAACCCGCGC TGCAGATAAT TTCCTGCTGC TTTCCTCCCA GGATTCAGAC
ACGGCGATGA TGCTCTCCAC TGACACGCTG TTAACAATGC TAAACCCTAC TCCTGACACT
GCATGGGACA ACTTTTACCT GCTGCGAGCC GGAGAGAACG TTTCCACCGC GCAAATCTCT
CCGGTAGAGT TATTCCGTCA TGACTTTCCG GTGTTTCTCG CCGCATTTAA TCAGCAGGCC
ACGCAGCGAC GCTTTGGGGA GCTGATTGAT ATCATCCTCA GCACTGAAGA GCACGGGGAG
CTGAACCAGC AGTTTATTGC CGCCACGAAC CAGAAACATT CCACCGTGAA GTTGATTGAT
GATGCCTCAG TGTCGCGTCT GGCCACCATT TTTGCCCCCT TGCTTCCTGA AGGCAAACTC
AGCCCGGCAC ACTACCAGCA CATCCTCAGT GCTTATCACC TGACGGACGC CACCCCACAG
AAGCAGGCGG AAACCCTGTT CTGTCTCAGT ACCGCATTCG CACGCTATTC CTCCAGCGCC
ATTTTCGGCA CTGAGCATGA CTCTCCGCCG GCCCTGAGAG GCTATGCGGA GGCGCTGATG
CAGAAAGCCT GGGAGCTGTC TCCGGCGATC TTCCCGTCCA GCGAACAGTT TACCGACTGG
TCCGACCGTT TTCACGGCCT CCATGGCGCC TTTACCTGTA CCAGCGTTGT GGCGGATAGT
ATGCAACGTC ATGCCAGAAA ATATTTCCCG AGTGTTCTGT CATCCATCCT GCCACTGGCC
TGGGCCTAG
 
Protein sequence
MKISSGAINF STIPNQVKKL ITSIREHTKN GLTSKITSVK NTHTSLNEKF KTGKDSPIEF 
ALPQKIKDFF QPKDKNTLNK TLITVKNIKD TNNAGKKNIS AEDVSKMNAA FMRKHIANQT
CDYNYRMTGA APLPGGVSVS ANNRPTVSEG RTPPVSPSLS LQATSSPSSP ADWAKKLTDA
VLRQKAGETL TAADRDFSNA DFRNITFSKI LPPSFMERDG DIIKGFNFSN SKFTYSDISH
LHFDECRFTY STLSDVVCSN TKFSNSDMNE VFLQYSITTQ QQPSFIDTTL KNTLIRHKAN
LSGVILNEPD NSSPPSVSRG GNFIRLGDIW LQMPLLWTEN AADGFLNHEH NNGKSILMTI
DSLPDKYSQE KVRAMEDLVK SLRDGRLTEA GIRPVESSLV SVLAHPPYTQ SALISEWLGP
VQERFFAHQC QTYNDVPLPA PDTYYQQRLL PVLLDSFDRN SAAMTTHSGL FNQVILHCMT
GVDCTDGIRQ KAAALYEQYL AHPAVSPHIH NGLFGNYDGS PDWTTRAADN FLLLSSQDSD
TAMMLSTDTL LTMLNPTPDT AWDNFYLLRA GENVSTAQIS PVELFRHDFP VFLAAFNQQA
TQRRFGELID IILSTEEHGE LNQQFIAATN QKHSTVKLID DASVSRLATI FAPLLPEGKL
SPAHYQHILS AYHLTDATPQ KQAETLFCLS TAFARYSSSA IFGTEHDSPP ALRGYAEALM
QKAWELSPAI FPSSEQFTDW SDRFHGLHGA FTCTSVVADS MQRHARKYFP SVLSSILPLA
WA