| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C1954 |
|---|
| Symbol | |
|---|
| ID | 6487610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | - |
|---|
| Start bp | 1901530 |
|---|
| End bp | 1903059 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642742159 |
|---|
| Product | tetratricopeptide repeat protein |
|---|
| Protein accession | YP_002045802 |
|---|
| Protein GI | 194448382 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 77 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTTT CATCAATTTT CAAAATAATA ATATTAAATA TATTTATTTC AAAAATGGCT
CACGCTGCTG TCTGCGAGGA GCGCTATCCC GCCGACTCAG AAGAATGCCA GTACGTTCAG
GAATTAGAGC AAAAAGCGGA ACAAGGAGAT GAAAGCGCGC AGTTCTCGCT TGGAAGCTGG
TATGCGGAGG GGCGATACGT TAAGCCTGAT TATAAACTAG CCATAAAATG GCTGGAGAAA
GCGGGTAAAC AAGGTTCTGA TTTTTCCTAT TTCATCCTTG GCTATCATTA CAACTATGGT
GAAAATTTTC CACTTAGTCG ACAAAAAGCG CTGGAGTGGT ATCGCAAGGC GGCAGAGCTA
GGGGATAGTA GTACGCAAGA AATCCTCGGT GACGCCTATA TGTATGGCGA TGGGTTTCCC
CAAAATACCC AGCTAGCGCT GGAGTGGTAT CGAAAAGCCG CCTCTCCAAC CAATGATGCG
GGCGTTGTCC GCGGACAGGG TTCAGCTTCG TCAGCACAAT TTAAGCTTGG AGTAATGTAC
GCCCACGGTC AGGGCGTTCC TCAGGATTAT CAGCAAACGG CGATCTTGAT GCGTAAAGCG
GCGGAAAATA TGTACTACCC CGCGCAACTT TATCTCGGCG TTGCCTATTT TTATGGTGAA
GGCGTGCCTC AGGATTATCG TCAGGCAGTT TACTGGCTTA ATGAAGGTAT ACCAGGCAGC
TATACGCCAG GCCACATTCC GCTGAATGCG CTCTATGATA AAGCGCATCC CGCTGACCGG
GTTCACTCTC AGACGTGGTA TCGAAAAACA GCGCAACGCG TGATGGCAAA GGTACAGTAC
AATTTTGGCG TATGGTATTA CAACGGTTAT CACTTATTGA AAGATCACAA CCTGGCGCTG
GAGTGGTATC GCAGAGCCGC AGCGCAAGGA TTGGCCGAGG CGCAGGATGC GATCGGCGTG
ATGTTTATGC AGGGTGAGGG CGTTTCTCAG GACTACCAAC AGGCGCTGGC GTGGTATCGC
AAAGCCGCTC GCCAGGGGCT GCCTGCTGCG CAAACGCATC TGGGCATCAT GTCTGCATTT
GGTCGCGGCG TCGCGCAAAG CGACAGACAG GCTATCGCAT GGTATCGAAA AGCAGCAAAA
CAGGATTTTG CGAAAGCGCA ATATCAGCTT GGCGTAGCAT ATAGCACGGG AAGAGGCGTG
CCTGAAAATA GCCGGAATGC GCTGAAGTGG TACCTCAAAG CGGCAGAGCA GGGGTTTACT
CCGGCACAAT CAGCGCTTGG GGAAATTTAT GCTCATGGGC GCCAGGGTGT GCCTAAAGAT
AATAAGCAGG CCTATATTTG GTATTACATG GCAAGTATGT ATACGGAAAA ATCTAAGGAT
GATTGTTCAG CGCTCATTGC CGAAAGAAAC CGACTCAAGG GAACGCTCAC CCCAGATCAA
CTTAGCGAGA CATATGCCGC CTTTAATCTC ATCTGGCGAA AAATTGATCA GTCAAAGGAG
GCGAAAAAGA TTGCCAGGAA GAAGTATTGA
|
|---|
| Protein sequence | MRFSSIFKII ILNIFISKMA HAAVCEERYP ADSEECQYVQ ELEQKAEQGD ESAQFSLGSW
YAEGRYVKPD YKLAIKWLEK AGKQGSDFSY FILGYHYNYG ENFPLSRQKA LEWYRKAAEL
GDSSTQEILG DAYMYGDGFP QNTQLALEWY RKAASPTNDA GVVRGQGSAS SAQFKLGVMY
AHGQGVPQDY QQTAILMRKA AENMYYPAQL YLGVAYFYGE GVPQDYRQAV YWLNEGIPGS
YTPGHIPLNA LYDKAHPADR VHSQTWYRKT AQRVMAKVQY NFGVWYYNGY HLLKDHNLAL
EWYRRAAAQG LAEAQDAIGV MFMQGEGVSQ DYQQALAWYR KAARQGLPAA QTHLGIMSAF
GRGVAQSDRQ AIAWYRKAAK QDFAKAQYQL GVAYSTGRGV PENSRNALKW YLKAAEQGFT
PAQSALGEIY AHGRQGVPKD NKQAYIWYYM ASMYTEKSKD DCSALIAERN RLKGTLTPDQ
LSETYAAFNL IWRKIDQSKE AKKIARKKY
|
|---|
| |