Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C1876 |
Symbol | pspA |
ID | 6489279 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | - |
Start bp | 1829560 |
End bp | 1830228 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642742089 |
Product | phage shock protein PspA |
Protein accession | YP_002045734 |
Protein GI | 194447762 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription |
TIGRFAM ID | [TIGR02977] phage shock protein A |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 0.00890059 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGTATTT TTTCTCGTTT TGCCGACATC GTGAACGCCA ATATCAATGC GTTGTTGGAA AAAGCGGAAG ATCCGCAGAA GCTGGTGCGC CTGATGATTC AGGAGATGGA AGATACGCTG GTGGAGGTTC GCTCGAACTC CGCGCGTGCT TTAGCGGAAA AGAAACAGTT ATCCCGTCGC ATTGAACAGG CTACGGTTCA GCAGACCGAG TGGCAGGAAA AAGCGGAACT GGCTCTGCGC AAAGATAAAG ACGATCTGGC GCGCGCCGCA TTGATTGAAA AACAAAAGCT GACCGATTTA ATTGCTACGC TTGAACAGGA AGTCACGCTG GTGGATGACA CGCTGGCGCG CATGAAGAAA GAGATTGGCG AGCTGGAAAA CAAACTCAGC GAAACACGCG CTCGCCAGCA GGCGCTGATG CTGCGTCATC AGGCGGCGAG TTCTTCCCGC GATGTCCGTC GTCAGCTTGA CAGCGGCAAA CTGGATGAAG CCATGGCGCG GTTTGAATCC TTTGAACGTC GTATCGATCA AATGGAAGCG GAAGCGGAAA GCCATCGTTT TGGTAAGCAG CAATCGCTGG ACCAACAGTT TGCCAACCTG AAAGCCGATG ATGAAATCAG CGAGCAGCTG GCGCAGTTGA AAGCCAAAAT GAAGCAAGAT AATCAATAA
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Protein sequence | MGIFSRFADI VNANINALLE KAEDPQKLVR LMIQEMEDTL VEVRSNSARA LAEKKQLSRR IEQATVQQTE WQEKAELALR KDKDDLARAA LIEKQKLTDL IATLEQEVTL VDDTLARMKK EIGELENKLS ETRARQQALM LRHQAASSSR DVRRQLDSGK LDEAMARFES FERRIDQMEA EAESHRFGKQ QSLDQQFANL KADDEISEQL AQLKAKMKQD NQ
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