Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C1528 |
Symbol | |
ID | 6490972 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | + |
Start bp | 1485917 |
End bp | 1487410 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 642741751 |
Product | type III secretion outer membrane pore, YscC/HrcC family |
Protein accession | YP_002045398 |
Protein GI | 194448307 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.633101 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 0.0399661 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTAGTAA ATAAACGTTT AATCTTAATT TTACTATTTA TACTCAATAC AGTAAAGAGT GATGAGTTAT CATGGAAAGG TAATGACTTC ACCCTTTATG CCAGACAAAT GCCATTAGCA GAGGTTTTAC ATCTGCTCTC AGAGAACTAT GATACGGCTA TTACTATTAG CCCATTGATA ACAGCTACAT TTAGTGGAAA AATTCCGCCT GGACCACCAG TCGATATTTT GAATAACCTG GCAGCACAAT ATGATTTGCT TACCTGGTTT GATGGCAGCA TGTTATATGT ATATCCTGCA TCGTTATTAA AACATCAGGT TATCACTTTC AATATTTTAT CTACTGGACG GTTCATTCAT TACTTACGCA GCCAGAATAT CCTTTCATCA CCGGGATGCG AGGTTAAAGA AATTACCGGT ACCAGAGCTG TGGAGGTGAG CGGTGTTCCC AGCTGTCTGA CTCGTATTAG TCAATTAGCT TCCGTGCTGG ATAATGCGTT AATCAAACGA AAAGACAGTG CGGTGAGTGT AAGTATATAC ACGCTTAAGT ATGCCACTGC GATGGATACC CAATACCAAT ATCGCGATCA GTCCGTCGTG GTTCCAGGGG TCGTGAGTGT ATTGCGTGAG ATGAGTAAAA CCAGCGTACC GGCGTCATCG ACGACCAATG GTTCACCCGC TACACAGGCA TTGCCCATGT TTGCTGCCGA CCCACGCCAG AATGCAGTGA TCGTTCGTGA TTATGCGGCC AATATGGCCG GGTATCGGAA ACTCATCACA GAATTAGATC AACGCCAGCA GATGATAGAG ATTTCGGTGA AAATTATCGA TGTTAATGCT GGAGATATTA ACCAGTTAGG CATCGACTGG GGAACGGCAG TGTCGCTGGG TGGCAAGAAA ATTGCGTTCA ATACAGGTTT GAATGACGGT GGTGCTAGTG GTTTTTCAAC GGTAATCAGC GATACCTCAA ACTTTATGGT GCGTTTGAAT GCCCTGGAAA AAAGCTCTCA GGCTTATGTA CTTTCCCAGC CATCTGTGGT GACTTTAAAT AATATCCAGG CTGTGCTAGA TAAAAATATT ACTTTCTATA CCAAACTGCA GGGAGAAAAA GTGGCTAAAC TTGAATCCAT CACTACGGGT TCTTTGTTAC GCGTTACACC TCGCTTGTTA AATGACAATG GCACGCAAAA AATAATGCTT AATCTTAATA TTCAGGATGG ACAACAAAGT GATACGCAAA GCGAAACAGA CCCGCTGCCC GAAGTGCAAA ATTCTGAAAT TGCTTCGCAG GCCACATTAT TGGCCGGACA AAGTCTATTG CTGGGAGGGT TTAAACAAGG TAAACAAATC CACTCGCAAA ACAAAATCCC TTTATTGGGC GATATTCCTG TTGTAGGTCA TTTGTTTCGC AATGATACGA CTCAAGTACA TAGTGTAATC AGGCTTTTTT TGATTAAAGC CTCAGTAGTA AATAATGGCA TATCTCATGG TTAA
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Protein sequence | MVVNKRLILI LLFILNTVKS DELSWKGNDF TLYARQMPLA EVLHLLSENY DTAITISPLI TATFSGKIPP GPPVDILNNL AAQYDLLTWF DGSMLYVYPA SLLKHQVITF NILSTGRFIH YLRSQNILSS PGCEVKEITG TRAVEVSGVP SCLTRISQLA SVLDNALIKR KDSAVSVSIY TLKYATAMDT QYQYRDQSVV VPGVVSVLRE MSKTSVPASS TTNGSPATQA LPMFAADPRQ NAVIVRDYAA NMAGYRKLIT ELDQRQQMIE ISVKIIDVNA GDINQLGIDW GTAVSLGGKK IAFNTGLNDG GASGFSTVIS DTSNFMVRLN ALEKSSQAYV LSQPSVVTLN NIQAVLDKNI TFYTKLQGEK VAKLESITTG SLLRVTPRLL NDNGTQKIML NLNIQDGQQS DTQSETDPLP EVQNSEIASQ ATLLAGQSLL LGGFKQGKQI HSQNKIPLLG DIPVVGHLFR NDTTQVHSVI RLFLIKASVV NNGISHG
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