| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C1342 |
|---|
| Symbol | potB |
|---|
| ID | 6489390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | - |
|---|
| Start bp | 1315523 |
|---|
| End bp | 1316386 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642741577 |
|---|
| Product | spermidine/putrescine ABC transporter membrane protein |
|---|
| Protein accession | YP_002045227 |
|---|
| Protein GI | 194448550 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 0.377668 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAACA CAAGTAAATT CCAGAATGTA GTGATTGTCA CTATCGTCGG TTGGCTTGTG
TTATTTGTTT TTCTGCCCAA CCTGATGATC ATTGGCACCA GCTTTCTGAC CCGTGACGAC
GCCAGTTTCG TCAAGATGGT CTTTACGCTG GATAACTACG CGCGCCTGCT CGATCCGCTC
TATTTTGAAG TGCTCCTGCA CTCTCTGAAT ATGGCGCTGA TCGCCACCCT CTCCTGCCTG
GTGCTGGGCT ATCCTTTTGC CTGGTTTCTG GCGAAGTTAC CGGAAAAGAT ACGTCCGTTA
TTGCTGTTTT TGCTGATTGT TCCTTTCTGG ACCAACTCAC TGATCCGCAT CTATGGGCTG
AAAATATTCC TGAGCACTAA AGGTTATCTC AATGAATTCC TGCTGTGGCT GGGCGTGATT
GATACACCGA TTCGCATCAT GTTCACCCCG AGCGCCGTTA TTATCGGCCT GGTTTACATT
TTGCTGCCAT TTATGGTCAT GCCGCTCTAC TCCAGCATTG AGAAGCTCGA CAAACCACTA
CTGGAGGCCG CACGCGATCT CGGCGCCAGT AAAATGCAAA CGTTCATCCG CATCATCATT
CCATTAACCA TGCCGGGCAT TGTCGCCGGT TGCCTGCTCG TGATGCTACC GGCAATGGGC
CTGTTCTACG TCTCCGATTT AATGGGTGGC GCGAAAAACC TGCTGATTGG TAACGTCATT
AAGGTACAGT TCCTGAATAT TCGCGATTGG CCGTTTGGCG CGGCTACCAG CATTACGCTG
ACCATTGTGA TGGGACTCAT GCTGTTGATT TACTGGCGGG CTTCCCGCTT ATTGAATAAG
AAGGTGAGTG ATATAAGCGA TTAA
|
|---|
| Protein sequence | MKNTSKFQNV VIVTIVGWLV LFVFLPNLMI IGTSFLTRDD ASFVKMVFTL DNYARLLDPL
YFEVLLHSLN MALIATLSCL VLGYPFAWFL AKLPEKIRPL LLFLLIVPFW TNSLIRIYGL
KIFLSTKGYL NEFLLWLGVI DTPIRIMFTP SAVIIGLVYI LLPFMVMPLY SSIEKLDKPL
LEAARDLGAS KMQTFIRIII PLTMPGIVAG CLLVMLPAMG LFYVSDLMGG AKNLLIGNVI
KVQFLNIRDW PFGAATSITL TIVMGLMLLI YWRASRLLNK KVSDISD
|
|---|
| |