Gene SeHA_C1198 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C1198 
Symbol 
ID6488451 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand- 
Start bp1181175 
End bp1182050 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content39% 
IMG OID642741438 
Productsecreted effector protein 
Protein accessionYP_002045089 
Protein GI194449243 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.631798 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones78 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAATAA CTAACGCGTC CCCAGAAAAT ATATTAAGAT ATTTGCATGC GGCCGGTACC 
GGTACGAAAG AAGCAATGAA AAGTGCAACT TCACCACGCG GTATACTGGA ATGGTTTGTC 
AATTTTTTTA CCTGTGGTGG AGTAAGAAGA AGCAATGAAA GATGGTTTCG GGAGGTAATT 
GGAAAACTGA CCACATCATT ATTATATGTA AATAAAAATG CTTTCTTCGA TGGTAATAAA 
ATATTTCTGG AGGATGTCAA CGGGTGTACT ATATGTCTGT CATGTGGAGC AGCATCCGAA 
AATACGGATC CCATGGTCAT TATTGAAGTG AACAAAAATG GAAAAACTGT AACGGATAAA 
GTTGATAGTG AGAGATTTTG GAATGTATGT CGAATGTTAA AACTGATGAG TAAACATAAT 
ATACAACAGC CTGATTCACT TATAACCGAG GATGGTTTTC TGAACCTGCG CGGAGTAAAC 
CTGGCTCATA AAGATTTCCA GGGGGAAGAT TTGTCAAAAA TAGATGCTTC TAATGCAGAT 
TTCCGTGAAA CAACTCTATC TAATGTAAAT TTAGTCGGTG CAAATTTGTG TTGTGCAAAT 
CTACACGCTG TAAATCTAAT GGGTTCAAAC ATGACTAAAG CAAACCTGAC TCACGCAGAC 
CTGACTTGCG CTAACATGTC CGGTGTAAAC TTAACCGCTG CAATTCTATT CGGCTCAGAC 
TTAACTGACA CCAAACTAAA TGGTGCGAAA TTAGATAAGA TAGCTCTAAC TTTAGCGAAA 
GCATTAACAG GAGCCGATCT GACAGGTAGT CAACATACCC CTACTCCACT CCCGGATTAC 
AATGATAGAA CTCTTTTCCC CCATCCGATA TTTTAG
 
Protein sequence
MPITNASPEN ILRYLHAAGT GTKEAMKSAT SPRGILEWFV NFFTCGGVRR SNERWFREVI 
GKLTTSLLYV NKNAFFDGNK IFLEDVNGCT ICLSCGAASE NTDPMVIIEV NKNGKTVTDK 
VDSERFWNVC RMLKLMSKHN IQQPDSLITE DGFLNLRGVN LAHKDFQGED LSKIDASNAD 
FRETTLSNVN LVGANLCCAN LHAVNLMGSN MTKANLTHAD LTCANMSGVN LTAAILFGSD 
LTDTKLNGAK LDKIALTLAK ALTGADLTGS QHTPTPLPDY NDRTLFPHPI F