Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C0769 |
Symbol | |
ID | 6491871 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | + |
Start bp | 762961 |
End bp | 764889 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642741022 |
Product | putative sigma-54 dependent transcriptional regulator |
Protein accession | YP_002044687 |
Protein GI | 194448545 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.989517 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 78 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAGA CGAAAGATAT AGCCGCATCT CCTCTCTGTT TTGTCTCTCC TTATCCGCAA CTGGCAAAGG CTGCCGAGGC GCTGGTCGCG CAGTTGGATT ACGCCGTCAC TATTCATCAA ACGACGCTTA ATCGTATCCT GGATGAGCTA CCTTTATTAG AGTCCCGTGG GCACCAGGTA CTGATTAGTC GTGGCGGCTG TGCGGAAATA TTAAAAAAGC ACAGTAAATT ACCGGTAGTC GAAATTAAAA TGTCCGGCTA CGACATTCTT GATGCGCTTA TCCCTTTTAA AGGACAAAAA GGCACTGTCG GTATTGTCGG CTTTTCCAGT GTGATCAAAG GATGCGCGCG CGTAGCGGAA CAGTTAAATA TTAACTATAA AATTTTTACC TTACAGGGAA ATGATAAAGA AACGATTTCT TGCCTGAAGC AACAATTAGC GTCCACGCCA TTAGATTGCA TTGTTGGCGA TACCGTTTGT CAGGATTATT TTTCACCGCT GGGCTCGCAA TTCCGTTTAC TTGATTCCAG CCCCGCCTCA ATAACCGAAG CTCTGGAAGA AGCCAGCTCA TTATATCTGG CTTTTCGCAG CCAATTACTC GAGCGTCATC ATCTGCAGCT GATTCTCGAT CAGTTTGATA AAGCTGTTAT CACGCTTGAT GATACCGGCG CGTTACTGCA TTATAATAAA TATGCGAGCC AACTTTTTAA AATTAACGCC TCCGGTGAAA TTTATGACGC GTCTTTTCTG AAACAGGTAT TGCTCCAGGA GCGGCATACA TTACGTGAGG GAAAAACCGT CAGCGCGAAA GTCGTCGATA CGCCGCAAGG CGCGATGGTG GTTAATCTGT ATCCGGTATT TGCGGCCAGA CAGTTAAGCC GGGTAGTGTT GACGATGCAA ACCGTCTCCA GTTTACAGGG GGCGGAACAT CATGTTCGCC GCCAGGAACT GTCTCGCCGC GGCTTGAGCG CCCGCTATCA TTTCGACGAT CTGCTTACCG AAAACCCGGA AATGCTGCGT CGTCTGGCGA TCATTAAAAA TTATGCCGGT ACGGACGCGA CTATCTTAAT TAATGGCGAA AGCGGGACGG GAAAAGAGGT GCTGGCGCAA AGTATTCATA ATGCCAGCCA ACGCGTCAAC GGCCCGTTTG TCGCCATTAA CTGCGGCGCG ATGGCCCCTC AGATTCTGGA GAGCGAACTC TTTGGCTATG TCGCCGGCGC ATTTACCGGC GCGTCGCCGA AAGGCAAAAT AGGCCTGTTT GAATTAGCGC ACCACGGTAC CATTTTTCTG GATGAGATTA GCGAGCTGGA TAAACCGCTA CAGACGCGCT TATTACGGGT ATTGCAGGAG CGGCAGATTA TGCGGCTGGG CTCAGACCAG ATGATACCTG TTGATATTCG CGTGATTGCG GCGACCAATC AGACGTTAAC GAAGCTCATT GCGGACGGGA CATTTCGCGA AGATCTTTAT TATCGGCTTA ACGTATTAAA AGTAACCACT ATCCCGCTAC GCAAACGTCC GGAGGATATC AAAGCCATCG GCCTGTCGCT GCTTACTAGT TTCAGCCAGC ATTATAAACG CCCGGCACTA ACGTTAACCC CGGCGCTGTG GCAAGAGCTT CAGCGCTTCG CCTGGCCCGG AAACGTCAGG CAGTTAAGCA ATATTATCGA ACGGCTGGTA CTCTCTATTG ATCACTCCCC GGCAACGCTG GATGAGGGTC GCCTCTTGCT GGACGATCTG GAAGAGGGGA GCCGACGCGA GCCAACTACC TGCCACGACT GCCAGATGCT GGCTGGCGAT TATAAAACGA TTCGCCTGCG TATTTTGAGA AAATTATTAG AGGCGGAAAG GGATAATAAA TCGTTAGTGG CGAAACGGTT AAATGTCGAT CGTACCTCGC TGACGCGCTG GATACGCGAG TCGGCCTGA
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Protein sequence | MNKTKDIAAS PLCFVSPYPQ LAKAAEALVA QLDYAVTIHQ TTLNRILDEL PLLESRGHQV LISRGGCAEI LKKHSKLPVV EIKMSGYDIL DALIPFKGQK GTVGIVGFSS VIKGCARVAE QLNINYKIFT LQGNDKETIS CLKQQLASTP LDCIVGDTVC QDYFSPLGSQ FRLLDSSPAS ITEALEEASS LYLAFRSQLL ERHHLQLILD QFDKAVITLD DTGALLHYNK YASQLFKINA SGEIYDASFL KQVLLQERHT LREGKTVSAK VVDTPQGAMV VNLYPVFAAR QLSRVVLTMQ TVSSLQGAEH HVRRQELSRR GLSARYHFDD LLTENPEMLR RLAIIKNYAG TDATILINGE SGTGKEVLAQ SIHNASQRVN GPFVAINCGA MAPQILESEL FGYVAGAFTG ASPKGKIGLF ELAHHGTIFL DEISELDKPL QTRLLRVLQE RQIMRLGSDQ MIPVDIRVIA ATNQTLTKLI ADGTFREDLY YRLNVLKVTT IPLRKRPEDI KAIGLSLLTS FSQHYKRPAL TLTPALWQEL QRFAWPGNVR QLSNIIERLV LSIDHSPATL DEGRLLLDDL EEGSRREPTT CHDCQMLAGD YKTIRLRILR KLLEAERDNK SLVAKRLNVD RTSLTRWIRE SA
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