Gene SeHA_C0317 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C0317 
Symbol 
ID6487908 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand
Start bp326646 
End bp327131 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content50% 
IMG OID642740594 
Producthemolysin-coregulated protein 
Protein accessionYP_002044262 
Protein GI194450289 
COG category[S] Function unknown 
COG ID[COG3157] Hemolysin-coregulated protein (uncharacterized) 
TIGRFAM ID[TIGR03344] type VI secretion system effector, Hcp1 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0313059 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones83 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTATG ACATTTTTCT GAAAATTGAC GGCATTGACG GCGAGTCAAT GGATGACAAA 
CACAAAAATG AAATTGAAGT ACTGAGCTGG CGCTGGAATA TTCATCAGGA ATCCACCATG
CACGCCGGTA GCGGTCTCGG TTCCGGTAAG GTCTCCGTCA CTAATCTTTC ATTTGAACAT
TACATCGATC GCGCCAGCCC GAACCTGTTC AAATACTGCT CTTCCGGTAA GCACATTCCG
CAGGCCATTC TGGTTATGCG TAAGGCTGGC GGCAATCCGC TGGAGTACCT CAAGTACACT
TTCACAGATC TGATTATTGC AATGGTATCG CCCAGCGGAA GCCAGGGAGG GGAAATTGCG
TCTCGCGAAT CAATTGAGCT CTCCTTCAGC ACCGTGAAGC AGGAATACGT GGTGCAGAAC
CAGCAGGGCG GCAGCGGCGG CACCATCACC GCAGGCTACG ACTTCAAGGC GAACAAAGAA
ATTTAA
 
Protein sequence
MSYDIFLKID GIDGESMDDK HKNEIEVLSW RWNIHQESTM HAGSGLGSGK VSVTNLSFEH 
YIDRASPNLF KYCSSGKHIP QAILVMRKAG GNPLEYLKYT FTDLIIAMVS PSGSQGGEIA
SRESIELSFS TVKQEYVVQN QQGGSGGTIT AGYDFKANKE I