Gene SeHA_C0311 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C0311 
Symbol 
ID6489354 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand
Start bp321700 
End bp322242 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content55% 
IMG OID642740588 
Producttype VI secretion protein, family 
Protein accessionYP_002044256 
Protein GI194450746 
COG category[S] Function unknown 
COG ID[COG3516] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03358] type VI secretion protein, VC_A0107 family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones77 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTATCA ACAATAGCGC GCAGAAATTC ATCGCGCGCA ACCGCGCGCC GCGCGTGCAG 
ATTGAATATG ACGTAGAGAT TTACGGTTCC GAGAAAAAAA TCGAGCTGCC GTTCGTGATG
GCGGTGCTGG CCGATCTGGC CGGGAAACCG CGTGAAGAAC TGCCGCCGGT GACGGATCGC
AAATTCCTCG ATATTGATAT TGATAACTTC AATGAGCGCA TGAAAGCCAT TGCGCCGCGC
GTGGCGTTCG CTGTGCCGAA TACGCTGACG GGTGAAGGTC AGTTGATGGT CGATATCACG
CTGGAAAATA TGGACGACTT TTCGCCGGCA CAGATTGCCC GCAAGGTGGA CGCCCTGAAC
CAGTTACTGG AAGCCCGCAC CCAACTGGCG AACCTCCAGA CCTACATGGA TGGTAAGGCC
GGGGCGGAAA ATCTGGTCAA TAAACTGTTG CAGGACCCGA CCCTGCTGAA AACGCTGGCG
AATGCGCCGA AACCGGCCGC TACCCAGCAA GGTGTGTCAG CGGATAATGA ATCAGCGGAA
TAA
 
Protein sequence
MAINNSAQKF IARNRAPRVQ IEYDVEIYGS EKKIELPFVM AVLADLAGKP REELPPVTDR 
KFLDIDIDNF NERMKAIAPR VAFAVPNTLT GEGQLMVDIT LENMDDFSPA QIARKVDALN
QLLEARTQLA NLQTYMDGKA GAENLVNKLL QDPTLLKTLA NAPKPAATQQ GVSADNESAE