Gene SeHA_C0306 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C0306 
SymbolvasA 
ID6488410 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand
Start bp314490 
End bp316373 
Gene Length1884 bp 
Protein Length627 aa 
Translation table11 
GC content60% 
IMG OID642740583 
Producttype VI secretion protein, family 
Protein accessionYP_002044251 
Protein GI194450586 
COG category[S] Function unknown 
COG ID[COG3519] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03359] type VI secretion protein, VC_A0110 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.665543 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones74 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCCAC GGCTACTGGA GTATTACAAC CGCGAACTGA GCTACCTGCG GGAGACCGGT 
GCTGAGTTCG CCACCCTCCA TCCCAAAATT GCCGCCCGGC TGGGGATGCA GAGAACCGAT
ATTGCCGACC CGTATGTGGA ACGCATGATC GAGGCGTTCA GCTTTCTGAG CGCCCGCACT
CAGCTAAAAA TTGACGCTGA GTTTCCCCGC TTCACACAGC GGTTACTGGA AGTCGTCAGC
CCCAATTACG TCACCCCCAC GCCATCGATG GCAGTGGCAA AGCTCTATCC CGATACGCAG
GAAGGCGACC TGGCGAAAGG GGTCACCGTG CCGCGCGATA CCGCGTTCGT TTCCCCCATC
CCGGAAGGCG AAAATACCGC CTGCCAGTTT CGCAGCAGCC AGGACGTCAC GCTGTGGCCG
CTGTCCATCG AGGAGGTACG CCTGACCGCC GCGCCGCCGG ATATGCCCGC CCTGCACCGC
TATCTGCCGC CTAATATTCA TGTCGCCGGG GCATTGCGCA TCACCCTGCG AACCTTCGGG
GAACTGACTT TCAGCGAGCT GGCCGGTCCG GCACGGCTGC CCTTTTACCT CTGCGGCGAA
GAACGCATTG CGTCACACCT GTTTGAGCTG CTGCATACCA GCGCCGTCGC CACACTGGCC
GGTGAACCCG GTCACTTTGA CGGCGAACTG AATGTGAATC TTCAACACCC GGTGGCGCAC
GAAGGGCTGG AGCCAGGGCA GGGGCTGCTG CCGCTCGCCT GGAACGTGTT TCACGGCCAT
AATCTGCTGC ATGAATTTTT CGCCTGCCCG GAACGGTTTT ACTTCTTCAC CCCGACCGGA
TTGTCTGCCG GGTTACAAAA GGTGCAGGGC AATGTGGCGG AAATTGTCAT ACTGCTTAAC
CGCCTGCCGC CGGACTGGCT GATTCATCAG ACGGACGCTG CACAGTTCAG CCTGTTCTGT
ACGCCGGTGA TCAACCTGTT TCCTCGCACC ACCACCCGGA TTGAAGTCAC TCACAGCGTG
ACGGAACAGC ATCTGGTGGT GGATCGTACC CGTCCGCTGG ATTACGAGGT GTTTTCTGTT
CAGGAAGTCG AAGGCCTGGA AGCGGAAACC ACACGGAAGA TGATTTTTCG TCCGCTGTAT
CACACCCGTA ATAATGACGA AGGCAACCAC GGGCGTTATT TTTCACTGCG TCGTGAACCG
CGCCGCTCGT CAGAAAACGC CCGCCGCTAT GGCACCCGAA CCCCCTATAC CGGCTCGGAA
GTCTTCCTCT CGCTGGTTGA TCAGCATGAA GCGCCCTACC CGGAAAATCT GCGCCATATC
ACCGTCACGG CAATGGTGAC TAACCGCGAT CTGCCCTGCC TTATTCCACG TAATGGCCGG
GATGATCTGA CCGTTGATGC GGCGATTCCG GTGGCGGGCG TGGGTCTTAT CAGACCGCCG
CGCCCGCCGC AGCCGCCGCT GGCTGAACGC GAAATGGCCT GGCGGCTGAT CCGGCAGTTG
TCGTTTAATT ATCTGCCGCT GGCCGATCTG GATCACCGCA CCGGCGGCCA GGCGCTGCGC
GATCTGCTGA ATCTGTTTAT CCCGGCTCAC GACAGCCCGC AGTCGCGCCA GGTGCGCAGC
CTGATTGGCT GCAAAACCAC CCCGGTGACC CGCCGCCTGC CCGGCTCCGG CCTGTTGGTC
TATGGCCGGG GCGTCAGTTG CGAACTGACC GTGGACGAAG AAGGATTTTC CGGTATCAGT
CCTTACCTGT TCGGTCTGGT GCTGGAACAC TATATTGCCC GCCATGTTTC CATTAATACC
TTCTCGCAGA TGACGCTGCA CTCGATGCAA CGCGGGCATG TCATGACCTG GCCGGTCAGA
ACCGGGCAAC GGGGGAGCGT ATGA
 
Protein sequence
MDPRLLEYYN RELSYLRETG AEFATLHPKI AARLGMQRTD IADPYVERMI EAFSFLSART 
QLKIDAEFPR FTQRLLEVVS PNYVTPTPSM AVAKLYPDTQ EGDLAKGVTV PRDTAFVSPI
PEGENTACQF RSSQDVTLWP LSIEEVRLTA APPDMPALHR YLPPNIHVAG ALRITLRTFG
ELTFSELAGP ARLPFYLCGE ERIASHLFEL LHTSAVATLA GEPGHFDGEL NVNLQHPVAH
EGLEPGQGLL PLAWNVFHGH NLLHEFFACP ERFYFFTPTG LSAGLQKVQG NVAEIVILLN
RLPPDWLIHQ TDAAQFSLFC TPVINLFPRT TTRIEVTHSV TEQHLVVDRT RPLDYEVFSV
QEVEGLEAET TRKMIFRPLY HTRNNDEGNH GRYFSLRREP RRSSENARRY GTRTPYTGSE
VFLSLVDQHE APYPENLRHI TVTAMVTNRD LPCLIPRNGR DDLTVDAAIP VAGVGLIRPP
RPPQPPLAER EMAWRLIRQL SFNYLPLADL DHRTGGQALR DLLNLFIPAH DSPQSRQVRS
LIGCKTTPVT RRLPGSGLLV YGRGVSCELT VDEEGFSGIS PYLFGLVLEH YIARHVSINT
FSQMTLHSMQ RGHVMTWPVR TGQRGSV