Gene SeHA_C0103 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C0103 
SymbolrapA 
ID6489889 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand
Start bp105402 
End bp108236 
Gene Length2835 bp 
Protein Length944 aa 
Translation table11 
GC content57% 
IMG OID642740391 
ProductATP-dependent helicase HepA 
Protein accessionYP_002044065 
Protein GI194447648 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0553] Superfamily II DNA/RNA helicases, SNF2 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones78 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGCGC GAACCGTCAC CTTACTTTTC CCGTCCACGG GGGAAAACCG CCTGTATGCG 
CGCAGTGATT CTCCCGTGAC CCGCGTCATG TTCAACCCTG GCGATACGAT TACAAGCCAT
GAAGGCTGGC AGCTACATAT CGATGAAGTA AAAGAAGAAA ATGGCCTGCT TGTTTATGTC
GGCACCCGCC TGGATACCGA AGAGACCAAT GTGACGTTGC GCGAAGTTCT GCTCGACAGC
AAGTTGGTTT TCAGTAAGCC CCAGGATCGT CTGTTCGCCG GTCAAATCGA TCGAATGGAT
CGGTTCGCGC TGCGCTATCG CGCCCGTAAA TTTCAGAGCG AGCAGTACCG GATGCCATAC
AGCGGTCTGC GCGGTCAGCG GACCAATCTG ATCCCGCATC AGCTTAATAT CGCTCATGAT
GTAGGTCGTC GCCACGCGCC GCGCGTACTG CTGGCGGATG AAGTGGGCTT AGGTAAAACC
ATTGAAGCCG GGATGATTCT GCATCAACAG TTATTATCCG GCGCGGCGGA ACGCGTATTG
ATCATCGTTC CGGAAACCCT GCAACACCAG TGGCTGGTAG AAATGCTGCG CCGTTTCAAC
CTGCGCTTCG CGCTGTTCGA TGACGAACGC TATACCGAAG CGCAGCACGA CGCGTATAAC
CCGTTTGAAA CCGAACAACT GGTGATCTGC TCGCTGGATT TCGCCCGCCG TAATAAGCAG
CGTCTGGAAC ATTTGTGCGA CGCCGAGTGG GATCTGCTGG TGGTCGACGA AGCGCATCAT
CTGGTGTGGA GTACCGATGC GCCGAGCCGT GAATATATGG CCATCGAACA GTTAGCTGAA
CGCGTACCGG GCGTGCTGCT GCTGACCGCC ACGCCAGAAC AGCTGGGGAT GGAAAGCCAT
TTCGCCCGTC TGCGCCTGCT GGATCCGAAC CGTTTCCACG ATTTCGAACA GTTTGTCGAA
GAACAGAAAA ACTACCGACC TGTCGCCGAT GCGGTGGCCA TGCTGCTGGC GGGCAATAAA
CTCAGCAACG ACGAACTGAA CAGGCTGGGC GATCTGATCG GCGAACAGGA TATTGAACCG
CTGTTGCAGG CCGCTAATAG CGATCGCGAC GATGCGCAGG CCGCCCGTGA TGAGCTGGTG
TCGATGCTGA TGGATCGCCA CGGCACCAGC CGCGTTCTGT TCCGCAACAC CCGTAACGGC
GTCAAGGGGT TCCCGAAACG TGAACTGCAT ACGGTAAAAC TGCCGCTGCC GACCCAGTAT
CAGACCGCCA TTAAGGTCTC CGGCATTATG GGCGCGCGTA AAAGCGCGGA AGATCGCGCC
CGCGATATGC TCTATCCGGA ACAAATTTAT CAGGAGTTCG AAGGCGATAC CGGCACCTGG
TGGAACTTCG ACCCACGCGT TGAGTGGCTA ATGGGCTATC TGACCAGCCA TCGTTCGCAA
AAAGTGCTGG TGATCTGCGC CAAAGCGACC ACCGCGTTAC AGCTGGAGCA GGTGCTGCGC
GAACGCGAAG GCATCCGCGC CGCCGTGTTC CATGAGGGCA TGTCGATTAT CGAACGCGAC
CGCGCCGCCG CCTGGTTCGC CGAAGAAGAT ACCGGCGCGC AGGTGCTGTT ATGTTCCGAA
ATCGGCTCCG AAGGACGTAA CTTCCAGTTT GCCAGCAATC TGGTGATGTT CGACTTGCCG
TTTAACCCGG ATCTGCTGGA ACAGCGTATT GGTCGTCTGG ATCGCATCGG CCAGGCGCAT
GATATCCAGA TCCACGTCCC GTACCTGGAA AAAACCGCCC AGTCGGTGCT GGTTCGCTGG
TATCACGAAG GGCTGGACGC CTTTGAGCAC ACCTGTCCAA CCGGCCGCGC GATTTATGAT
TCAGCCTACG CCAGTCTGAT TAACTATCTG GCCGCGCCTG AAGAAACCGA CGGGTTTGAC
GATCTGATCA AATCCTGCCG CGAGCAACAT GAAGCGCTAA AAGCCCAGTT AGAACAGGGC
CGCGACCGCC TGCTGGAGAT CCACTCCAAC GGTGGTGAAA AAGCCCAACA GCTTGCACAA
AGCATTGAAG AACAGGACGA CGACACCAAC CTGATTGCGT TCGCCATGAA CCTGTTCGAT
ATCGTCGGCA TTAACCAGGA CGATCGCGGC GACAACCTGA TCGTGCTGAC GCCGTCCGAC
CACATGTTGG TGCCGGATTT CCCCGGCCTG CCGGAAGACG GCTGTACTAT CACGTTTGAA
CGTGACGTAG CCCTGTCTCG CGAAGATGCG CAGTTTATTA CCTGGGAACA TCCGCTCATC
CGTAACGGAC TGGATCTGAT CCTCTCCGGC GACACCGGCA GCAGCACCAT TTCGCTGTTG
AAAAATAAAG CGCTGCCCGT CGGCACGCTG CTGGTCGAAC TGGTTTACGT CGTGGAAGCG
CAGGCGCCGA AACAGCTACA ACTGAACCGC TTCCTGCCGC CGACGCCGGT ACGTATGCTG
TTAGATAAAA ACGGCAACAA TCTGGCCGCC CAGGTCGAGT TTGAAACCTT CAACCGCCAG
CTCAGCGCCG TGAATCGCCA CACCGGTAGC AAACTGGTGA ACGCCGTTCA ACAGGACGTC
CACGCCATTT TGCAACTGGG CGAGACGCAG ATTGAAAAGT CCGCCAGAGC GCTGATTGAT
AACGCGCGCC GCGAGGCGGA TGAAAAACTG TCCGGGGAAC TGTCGCGTCT GGAAGCGCTG
CGCGCCGTCA ACCCGAACAT TCGCGACGAC GAACTTGCCG CTATCGACAG CAACCGTCAG
CAGGTGCTGG AAAGCCTGAA TCAGGCAGGC TGGCGTCTGG ACGCGCTGCG TCTTATCGTC
GTCACGCACC AATAA
 
Protein sequence
MDARTVTLLF PSTGENRLYA RSDSPVTRVM FNPGDTITSH EGWQLHIDEV KEENGLLVYV 
GTRLDTEETN VTLREVLLDS KLVFSKPQDR LFAGQIDRMD RFALRYRARK FQSEQYRMPY
SGLRGQRTNL IPHQLNIAHD VGRRHAPRVL LADEVGLGKT IEAGMILHQQ LLSGAAERVL
IIVPETLQHQ WLVEMLRRFN LRFALFDDER YTEAQHDAYN PFETEQLVIC SLDFARRNKQ
RLEHLCDAEW DLLVVDEAHH LVWSTDAPSR EYMAIEQLAE RVPGVLLLTA TPEQLGMESH
FARLRLLDPN RFHDFEQFVE EQKNYRPVAD AVAMLLAGNK LSNDELNRLG DLIGEQDIEP
LLQAANSDRD DAQAARDELV SMLMDRHGTS RVLFRNTRNG VKGFPKRELH TVKLPLPTQY
QTAIKVSGIM GARKSAEDRA RDMLYPEQIY QEFEGDTGTW WNFDPRVEWL MGYLTSHRSQ
KVLVICAKAT TALQLEQVLR EREGIRAAVF HEGMSIIERD RAAAWFAEED TGAQVLLCSE
IGSEGRNFQF ASNLVMFDLP FNPDLLEQRI GRLDRIGQAH DIQIHVPYLE KTAQSVLVRW
YHEGLDAFEH TCPTGRAIYD SAYASLINYL AAPEETDGFD DLIKSCREQH EALKAQLEQG
RDRLLEIHSN GGEKAQQLAQ SIEEQDDDTN LIAFAMNLFD IVGINQDDRG DNLIVLTPSD
HMLVPDFPGL PEDGCTITFE RDVALSREDA QFITWEHPLI RNGLDLILSG DTGSSTISLL
KNKALPVGTL LVELVYVVEA QAPKQLQLNR FLPPTPVRML LDKNGNNLAA QVEFETFNRQ
LSAVNRHTGS KLVNAVQQDV HAILQLGETQ IEKSARALID NARREADEKL SGELSRLEAL
RAVNPNIRDD ELAAIDSNRQ QVLESLNQAG WRLDALRLIV VTHQ