| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4928 |
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| Symbol | |
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| ID | 6484068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 4796676 |
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| End bp | 4799084 |
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| Gene Length | 2409 bp |
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| Protein Length | 802 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642740139 |
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| Product | fimbrial usher protein |
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| Protein accession | YP_002043813 |
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| Protein GI | 194443551 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 94 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGTATT TAAAACTGCC GCTATACATC AAAACCGCGC TTTATTGCTC ACTGGCGACC
ACGACGTTTT CAGCTCTGGC GGAGGAGCTG AATTTTGACA TGGGTATTCT CACCTCCAGA
GGCATTAGCC CCAACGTCGC ACAATATTTT TCCCGCGCGC CGCGCTTTCT ACCAGGCAGC
CACACCGTCA TGGTAAAGAT CAATGGCGTA AATAGAGGGT CGTTGGTCGC GCGTTTCGAC
ACAGAAGGCC AGCTTTGCGT GGATGACGAT TTCCTCAGCG CCAGCGGGCT CGTACCGCTT
AATATCAGCG CCAAAGAAAC CTGCCATAGC CTACAAGAAG ATTATCCCTC AGCGATTATT
ACCCCACTGC CAAACAGTGA ATCGCTGGAG CTTTTTGTTC CGGCACAGGC TCTGGATAAT
AACTTACTAT CGCTAAACAA CGTGATTAAA GGCGGCACCG CCGGGTTATT TAACTATAAC
CTGTACGCCA GTCGCAGCGA GTCATCCGGT AGCGATAGCC GAAACTATGC CCAGGCAAAC
CTTGAAGCTG GCTTAAACTT CGCGGAATGG ACGCTGCGCA GCCGCTACAT GCTGACGAAT
AATGATGGAG AATACCGTAC CGATAGTCTA TATACCTATG CGGAGCACGT ATTTCAGGCA
CAAAAAATGC GTGCGCAAGT TGGGCAGATC AACGTCAACT CCAGTCTATT CAGTGGCGCG
CCGATCAACG GCGTACAGCT TATCCCTGAA CAAGGGCTGG CACAGGATAC ACAAGGCGTA
GCCATTAACG GTATTGCCCG AACCCACCAG GCTCGCGTTG AAGTTCGTCA GTCCGGACAG
ATTATTTATA CCGCACCAGT GAACGCTGGG GCATTTACCC TTGAAAATGT CCCCATCATA
CGCAGCAATA CCGACCTTAA CGTCAGCGTC GTTGAAACCG ATGGCTCAAC GACAACCTTC
ACGGTGCCGG CAGTATCCTT TAATTTACGC GAACTCACGC CCGCAGGCTT AACAATGTCC
ATAGGGCGCA TACGTGATAC CACCAGCGAC TATTCGCTTC CCTGGATCTA TAACATCAGC
GATGGTTGGA AACTGAGTGA AAACTGGCTG GCGCAGGCGT CTGGCGTACT GGCACAAGAC
TATCAAGCGG CAGGAGGGAT GCTGCAATGG CTTCCAACCA ACAAATGGAC GTTTTCCGGC
TCAATGCTGG GCAGTAAAGC GTCCTTTGGC GAATCTCTGC AGGGTGCGAA AAGTGAACTA
CGCGCCAGCA TGGCGCTGCC CGGGGAAATT AGACTTGACG TCAGTACCGC CCGCTACAGC
GACGGATATC GTGAGTTAAC GGATGCGCTC AATAAAGATG CTTACGAATA TCAAAGTAGC
TCCAGTGCTA ATATTGCCTG GAACCATAAT CTGTTAGGTA CCTTCTCTCT GGGTTATTAC
ACTTATCAGG CTACGGATAA TGACAACGAC TCTCGCAGCA TAATGGCTTC CTGGGGCAAA
ACGTTTAAAT ATGCCTCAAT TACCGCTAAC TGGCAGCACG CTGTTAATCA GGATGATGAG
AATCATAACG ACAGTAATGA TGATGATATG TTTTACATCA ACATCAGCAT TCCACTCGGT
GAGCAGCGCG TCGGCGCTTA TATGCGTAAT CAAGGTGATA AAACAACCTA CGGGCTACAA
AATAATGGTT CGCTGAGTAA AGATACCCAT TACTATATTT CTGCGGATCG TGATGCAAAA
AACCAGCAAA ATAGCTTCAA CGGTAATCTC AATAGCAATC TTCATTACAC TCAACTCAGC
GTGGGCGGCG GCACTGATGG CGATAATTAC CGCAACTATA ACGCAACCTT CAGCGGAGGC
ATCGCTGCAC ACGAACATGG CATAACGTTC TCGCCTTACA CAATCAAAAA TACATTTGCT
ATCGCACGCC TGAGTGAACC AGAAAGCGGC ATTGAAATCG CCACGCCACA GGGGCGAATC
TGGACTGACC ACTGGGGGCA AGCCGTCATT CCGGGGCTAA CTGAATGGCG GAAATCCCGC
GTAGAGGTTA ATGCGAATAC GCTACCAAAG AGTATGGAAC TGGCAAACGG TATTAAGAAT
ATTACCGTCG CGCACAGCGC TTTTCGGGTA CTGGATTTCA ACGTGCTGAA TACACGCCGT
GTGATGCTGG CAGTAAAGCG TCCGGATGGC TCATGGCTAC CTAAAGGCAC CAGCATTGTA
GATGAAAAAA ATAACTATTT GGTCAGCGCT GTCGACAGCG GACGCGTATT TATCACCGAT
GTTGGGGATA ATCCTGCGTT ATATGCCGCT GATGATGATA TGAATCGTCT GTGTCGCATC
CACTACACGC TGCAGAAAAC CCAGGATAAA GAGGCATTTT ATGAAACGGC AAAGGGAGTC
TGTCAATGA
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| Protein sequence | MKYLKLPLYI KTALYCSLAT TTFSALAEEL NFDMGILTSR GISPNVAQYF SRAPRFLPGS
HTVMVKINGV NRGSLVARFD TEGQLCVDDD FLSASGLVPL NISAKETCHS LQEDYPSAII
TPLPNSESLE LFVPAQALDN NLLSLNNVIK GGTAGLFNYN LYASRSESSG SDSRNYAQAN
LEAGLNFAEW TLRSRYMLTN NDGEYRTDSL YTYAEHVFQA QKMRAQVGQI NVNSSLFSGA
PINGVQLIPE QGLAQDTQGV AINGIARTHQ ARVEVRQSGQ IIYTAPVNAG AFTLENVPII
RSNTDLNVSV VETDGSTTTF TVPAVSFNLR ELTPAGLTMS IGRIRDTTSD YSLPWIYNIS
DGWKLSENWL AQASGVLAQD YQAAGGMLQW LPTNKWTFSG SMLGSKASFG ESLQGAKSEL
RASMALPGEI RLDVSTARYS DGYRELTDAL NKDAYEYQSS SSANIAWNHN LLGTFSLGYY
TYQATDNDND SRSIMASWGK TFKYASITAN WQHAVNQDDE NHNDSNDDDM FYINISIPLG
EQRVGAYMRN QGDKTTYGLQ NNGSLSKDTH YYISADRDAK NQQNSFNGNL NSNLHYTQLS
VGGGTDGDNY RNYNATFSGG IAAHEHGITF SPYTIKNTFA IARLSEPESG IEIATPQGRI
WTDHWGQAVI PGLTEWRKSR VEVNANTLPK SMELANGIKN ITVAHSAFRV LDFNVLNTRR
VMLAVKRPDG SWLPKGTSIV DEKNNYLVSA VDSGRVFITD VGDNPALYAA DDDMNRLCRI
HYTLQKTQDK EAFYETAKGV CQ
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