| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A4889 |
|---|
| Symbol | |
|---|
| ID | 6484280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 4762277 |
|---|
| End bp | 4765042 |
|---|
| Gene Length | 2766 bp |
|---|
| Protein Length | 921 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642740100 |
|---|
| Product | sigma-54 dependent DNA-binding response regulator |
|---|
| Protein accession | YP_002043777 |
|---|
| Protein GI | 194443761 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3933] Transcriptional antiterminator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.27762 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAAG ATGCCCTGCT TGCTTTCCTG ATGAACCAAA CGGATTTTTT TGATCCGGAA
AATGTCAGTG AGGTGTTTAC CGCGCGCTAT CTGGCGCAGC GTTTTAATAT GCAGCGCAAT
ACCGCCAGCC ATTATCTGAA CCAACTGGTG GCGCAGGGCG TGCTCTGCAA AATCAATACC
CGTCCCGTCT ATTTCCTGCA TAAGCAGGCA TTTAGCCAAC AGTTTTTTAC CCTTTCGCGT
AATGAATACG CCAGCGTCGC GGAGCTGTTA GCGCACGGGG AACAGGAGTG CGCGCCGGAC
GATCACTTTT CTCTGTTGAT TGGTCATAAC GAAAGCCTGA AGCGGCCGAT TGAGCAACTG
AAAACCGCGC TGTTTTATCC CGACGGCGGA CTGCCGCTAC TGATGACCGG CGAAAGCGGC
ACCGGGAAAA GTTATCTGGC GCAGCTCATG CACGAATATG CCATCGCCCA GGCGCTTCTG
TCGCCGGATG CGCCATTTAT CAGTTTTAAT TGCGCCCAGT ATGCGAGCAA TCCCGAACTG
CTCGCGGCGA ATCTTTTTGG CTATGTGAAG GGCGCGTTTA CCGGCGCGCA GAGCGACAGA
CCGGGCGCGT TCGAGGCGGC TGACGGCGGC ATGTTATTCC TGGATGAAGT CCACCGGCTG
AGCGCCGAAG GGCAGGAGAA GCTCTTTACC TGGCTCGATC GTGGTGAAAT TTATCGGGTA
GGCGACACCG CGCAGGGGCA TCCGGTTTCG GTACGTCTGG TATTTGCGAC GACCGAAGAG
ATACACAGTA CCTTTCTGAC GACATTTTTG CGACGCATCC CGATTCAGGT CAACCTGCCG
GATCTCCAGC ACCGCAGCCG CCAGGAAAAA GAGGCGCTGA TCTTACTGTT TTTCTGGACG
GAGGCGAAAA AACTTTCGGC CACGCTTATC CTCAAACCGC GTTTGTTGCA GATCCTCAAT
CAATATGTTT ATCGCGGCAA CGTCGGCGAG CTGAAAAATG TGGTGAAGTA TGCGGTGGCG
ACGGCATGGG CGAAAAAGCC TGGGCAGGAA ACCGTTACCG TGTCGCTGCA CGATCTGCCG
GATGCCATGC TGTCGGCATT GCCGTCACTG AATGAACCGC TGGCGGACGA CACGCCGGTG
AGCATCTCGC CCGACACGAA CCTTACCTGG CTGCTGCGCG CCCGCGACGA GATGCAGGGC
ATGATCCATG ATACGCAGTG TCATGTGCTG GCGCTGTACG AGCTGGTACG TAGCGGGAAA
GAGGGGTGGG AGACGGTACA AAAAAGAATG GGCGATGAAA TTGAGACCCT CTTCGATCGC
CTGATTTTTA CCGGCGACGA TAATGTGCAC TCACAGCGGT TGCTGTTAAT TACAAGCCAG
GTGCGGGAAG AGTTTTATCG TCTGGAGAAG CGCTTCAATA TGCAGCTTAA CGGCAACTGT
ATTTACGCGC TTAGCCACTA TTTAATCCAT CGTACCGCAC TGGCGCCTTC TCGTCTCAAC
AGCGAGCAGA TCCGCCAACT GGACGCCTTC CTCGCCCAGA AATATCCGCT GCTGTACAGC
TTCTGTTTAC AAATTCTGGA GACGCTGGGC CAGAAGCTGG ATCTGGAGCC GAGACGCATT
GATATGCTGC TGCTGGCGCT TTGGCTGCAT AAACAGGGGG CTAACAACCA AAAACAGGTG
ACGCATGCGG TGATTCTGGC GCATGGCTAT GCCACCGCCA GCAGTATCGC CAACGTCGCC
AACCGGTTAC TGAAAAATAC GATTTTTGAA TCGTTCGATA TGCCGCTGGA CGTCACGCCG
GAGGCGATAG CGCAACAGGT GATGCGCTAT CTGGAAGAGC ATCCGCTCGC CTCCGGCCTG
ATGATTCTGG TGGATATGGG ATCGCTCAAA GCCATTCATC GTCATTTTGA TCGCGCGCTT
TCCACGCCGG TGACGATTAT CAACAACGTC TCGACCAGCA TGGCCCTGTA TGTAGGGGAG
CGTATTTTAC AGGGGCATTT TATTGAAGAG ATCGCCCGCG ATATCGCCCG GGATGTGCCG
GTCGAGTATC AGCTCTACTG GCCGAAAAGC AACAAACCGC GCGCCATACT GACCACCTGC
GCGACCGGTA TCGGGGTGGC GACGAATCTT TGCGCATTAC TGAGCGCCAG TATTCCGCAG
GCGTTGGAGA TTGACGTCGT CGCCTGCGAT TATGCGATGC TGGCGAGCAA TAAAACCCAG
GAGCCGGTGT TTATGCGCTA CGACGTACTG GCGATAGTCG GCACGCTGGA CCCGCACATC
GCCAGCGTGC CGTGGATTTC GCTCGACTCG CTGATCTCCG GCGAGGGGAA TCACTATCTG
ATGCGGCTGT TTGGTTCGCT GACCACGCCG GAGCAGGTGG CGGAGATCAA CAACCTGCTG
CTGAAAAACT TCTCGCTCCG ACGAGTGATC GAATCCGTCA CCATCCTCGA CACCAGCAAA
GTCATCAACC ATGTTGAGCA GTTTCTGCTG CGTTATGAGC ATCTGGCGGG CGTTACCGTC
TCGAATGAAA GAAAGGTGGC GCTCTATGTG CATATTAGTT GCCTGATTGA GCGTCTGATC
CGCCATGCGG GCATTACTGC TTATAGTGGA CAACAGTGTC CGGAACAGGA ACTGAATCGG
CTACGGGAAG CGTTTAGTGT CATTGAGAGT AACTACAGTG TCAAAATCCC CACCGCCGAG
CTTGGCTATA TCCATAATAT CCTGACCTTC GAAACAGAAC TTATCGAGCA AGATCAACAG
TTTTAA
|
|---|
| Protein sequence | MRKDALLAFL MNQTDFFDPE NVSEVFTARY LAQRFNMQRN TASHYLNQLV AQGVLCKINT
RPVYFLHKQA FSQQFFTLSR NEYASVAELL AHGEQECAPD DHFSLLIGHN ESLKRPIEQL
KTALFYPDGG LPLLMTGESG TGKSYLAQLM HEYAIAQALL SPDAPFISFN CAQYASNPEL
LAANLFGYVK GAFTGAQSDR PGAFEAADGG MLFLDEVHRL SAEGQEKLFT WLDRGEIYRV
GDTAQGHPVS VRLVFATTEE IHSTFLTTFL RRIPIQVNLP DLQHRSRQEK EALILLFFWT
EAKKLSATLI LKPRLLQILN QYVYRGNVGE LKNVVKYAVA TAWAKKPGQE TVTVSLHDLP
DAMLSALPSL NEPLADDTPV SISPDTNLTW LLRARDEMQG MIHDTQCHVL ALYELVRSGK
EGWETVQKRM GDEIETLFDR LIFTGDDNVH SQRLLLITSQ VREEFYRLEK RFNMQLNGNC
IYALSHYLIH RTALAPSRLN SEQIRQLDAF LAQKYPLLYS FCLQILETLG QKLDLEPRRI
DMLLLALWLH KQGANNQKQV THAVILAHGY ATASSIANVA NRLLKNTIFE SFDMPLDVTP
EAIAQQVMRY LEEHPLASGL MILVDMGSLK AIHRHFDRAL STPVTIINNV STSMALYVGE
RILQGHFIEE IARDIARDVP VEYQLYWPKS NKPRAILTTC ATGIGVATNL CALLSASIPQ
ALEIDVVACD YAMLASNKTQ EPVFMRYDVL AIVGTLDPHI ASVPWISLDS LISGEGNHYL
MRLFGSLTTP EQVAEINNLL LKNFSLRRVI ESVTILDTSK VINHVEQFLL RYEHLAGVTV
SNERKVALYV HISCLIERLI RHAGITAYSG QQCPEQELNR LREAFSVIES NYSVKIPTAE
LGYIHNILTF ETELIEQDQQ F
|
|---|
| |